1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatactgccacatcttttgctatatgctgacacttgtgatgtcatgcagGTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAG
species | Selaginella moellendorffii |
transcript | EFJ27687 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACATGCGTGGAGAGTTGGATGACACAGCTCTCTTCAAAAACTTCCAGAA GTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGCEST: gi|169071278|gb|FE478410.1|FE478410
genomic: GACATGCGTGGAGAGTTGGATGACACAGCTCTCTTCAAAAACTTCCAGAAgtatactgcc ... tgtcatgcagGTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGC
EST: GACATGCGTGGAGAGTTGGATGACACAGCTCTCTTCAAAAACTTCCAGAA GTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGCEST: gi|169037362|gb|FE443308.1|FE443308
genomic: GACATGCGTGGAGAGTTGGATGACACAGCTCTCTTCAAAAACTTCCAGAAgtatactgcc ... tgtcatgcagGTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGC
EST: GACATGCGTGGAGAGTTGGATGACACAGCTCTCTTCAAAAACTTCCAGAA GTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGCEST: gi|169112908|gb|FE514660.1|FE514660
genomic: GACATGCGTGGAGAGTTGGATGACACAGCTCTCTTCAAAAACTTCCAGAAgtatactgcc ... tgtcatgcagGTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGC
EST: GACATGCGTGGAGAGTTGGATGACACAGCTCTCTTCAAAAACTTCCAGAA GTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGCEST: gi|169039922|gb|FE447608.1|FE447608
genomic: GACATGCGTGGAGAGTTGGATGACACAGCTCTCTTCAAAAACTTCCAGAAgtatactgcc ... tgtcatgcagGTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGC
EST: GACATGCGTGGAGAGTCGGATGACACAGCTCTCTTCAAAAACTTCCAGAA GTGGGGCAATGTGGAATTTCCAGTTCEST: gi|169082642|gb|FE486201.1|FE486201
genomic: GACATGCGTGGAGAGTTGGATGACACAGCTCTCTTCAAAAACTTCCAGAAgtatactgcc ... tgtcatgcagGTGGGGCAATGTGGAATTTCCAGTTC
EST: GTTGGATGACACANGCTCTCTTCAAAAACTTCCAGAA GTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGCEST: gi|169044046|gb|FE451632.1|FE451632
genomic: GTTGGATGACACA-GCTCTCTTCAAAAACTTCCAGAAgtatactgcc ... tgtcatgcagGTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGC
EST: GACATGCGTGGAGAGTGGGATGACACAGCTCTCTTCAAAAACTTCCAGAA GTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGC
genomic: GACATGCGTGGAGAGTTGGATGACACAGCTCTCTTCAAAAACTTCCAGAAgtatactgcc ... tgtcatgcagGTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGC
gtatactgccacatcttttgctatatgctgacacttgtgatgtcatgcagGTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAG
tgctgac putative branch site (score: 12)
atctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatactgccacatcttttgctatatgctgacacttgtgatgtcatgcagGTGGGGCAATGTGGAATTTCCAGTTCCATTTGGCAGAGTGATGACACCTGCTGAGGAGTCAATCCACAAGATGGATGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA