1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtattgttaatccaaatgcctggtacggttgctgaatgatgttttcgatgcagGGATTTGATGTGCTAAAAAGTCACATCGAAACGTACAAAGGACCTCGTACTGGAAGGTCACGCATTCTTCTGGACTCTGATGTCCATGCTGCATTGGAGA
species | Selaginella moellendorffii |
transcript | EFJ27223 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAGCACGACGAACATCTGAAGAGTCTTTTGGAGATTTTACAATGAGAATG GGATTTGATGTACTAAAAAGTCACATCGAAACTTACAAAGGACCTCGTACTEST: gi|169058053|gb|FE463961.1|FE463961
genomic: AAGCACGACGAACATCTGAAGAGTCTTTTGGAGATTTTACAATGAGAATGgtattgttaa ... ttcgatgcagGGATTTGATGTGCTAAAAAGTCACATCGAAACGTACAAAGGACCTCGTACT
EST: AAGCACGACGAACATCTGAAGAGTCTTTTGGAGATTTTACAATGAGAATG GGATTTGATGTACTAAAAAGTCACATCGAAACTTACAAAGGACCTCGTACTEST: gi|169021602|gb|FE428624.1|FE428624
genomic: AAGCACGACGAACATCTGAAGAGTCTTTTGGAGATTTTACAATGAGAATGgtattgttaa ... ttcgatgcagGGATTTGATGTGCTAAAAAGTCACATCGAAACGTACAAAGGACCTCGTACT
EST: AAGCACGACGAACATCTGAAGAGTCTTTTGGAGATTTTCCAATGAGAATG GGATTTGATGTGCTAAAAAGTCACATCGAAACGTACAAAGGACCTCGTACTEST: gi|169056320|gb|FE464429.1|FE464429
genomic: AAGCACGACGAACATCTGAAGAGTCTTTTGGAGATTTTACAATGAGAATGgtattgttaa ... ttcgatgcagGGATTTGATGTGCTAAAAAGTCACATCGAAACGTACAAAGGACCTCGTACT
EST: AAGCACGACGAACATCTGAAGAGTCTTTTGGAGATTTTACAATGAGAATG GGATTTGATGTGCTAAAAAGTCACATCGAAACGTACAAAGGACCTCGTACT
genomic: AAGCACGACGAACATCTGAAGAGTCTTTTGGAGATTTTACAATGAGAATGgtattgttaa ... ttcgatgcagGGATTTGATGTGCTAAAAAGTCACATCGAAACGTACAAAGGACCTCGTACT
gtattgttaatccaaatgcctggtacggttgctgaatgatgttttcgatgcagGGATTTGATGTGCTAAAAAGTCACATCGAAACGTACAAAGGACCTCGTACTGGAAGGTCACGCATTCTTCTGGACTCTGATGTCCATGCTGCATTGGAGA
tgttaat putative branch site (score: 9)
tgttttc putative PPT
ttgttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgttaatccaaatgcctggtacggttgctgaatgatgttttcgatgcagGGATTTGATGTGCTAAAAAGTCACATCGAAACGTACAAAGGACCTCGTACTGGAAGGTCACGCATTCTTCTGGACTCTGATGTCCATGCTGCATTGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA