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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttacttgttaaacaagtcttggttcttctcctcgagctttgaaagttgacactgtcaactctggcttgcgtgtgacaaatagATTACATAATCCCCAAGGGCTGGAAAGTGATGCCGCTGTTCAGGATGCTCCACCACAGCCCAGACTTCTTCCCGGACCCATTCAAGTTTGATCCCTCCAG

Basic information

species Selaginella moellendorffii
transcript EFJ26974
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ26689 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GRMZM2G179147_T02 (Zea mays), 3'ss of exon 3
---------gtattttact--tgttaaacaagtct--tggttcttctcctcgagctttgaaagttgacactgtcaactctggcttgcgtgtgacaaatagATTACATAATCCCCAAGGGCTGGAAAGTGATGCCGCTGTTCAGGATGCTCCACCACAGCCCAGACTTCTTCCCGGACCCATTCAAGTTTGATCCCTCCAG
         ||    | ||   | | |||  | |    ||  |   | |   | |      | | ||||   | |    |    || |||        ||  ||| | ||||||||||||||||| |||||||| |||||| |||   ||||||||||||| |||  ||||||   |||    ||||| || |||||| |
gtccctgtcgtgcgctgctgcggatgaactggacggacgggacgcgttcctaaccgaaatgaatagacagactgactcatccgctgtgtgctggctgcagGGTACCTGATCCCCAAGGGCTGGAAGGTGATGCCCCTGTTCCGGAACATCCACCACAGCCCCGACCACTTCCCCTGCCCGGAGAAGTTCGACCCCTCCCG

upper sequence: EFJ26689 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GRMZM2G126505_T02 (Zea mays), 3'ss of exon 3
--------------------------------------------------------------------------------------------gtattttacttgttaaacaagtcttggttcttctcctcgagctt---tgaa---agttgac--actgtcaactctggcttgcgtgtgacaaat------agATTACATAATCCCCAAGGGCTGGAAAGTGATGCCGCTGTTCAGGATGCTCCACCACAGCCCAGACTTCTTCCCGGACCCATTCAAGTTTGATCCCTCCAG
                                                                                            ||    | |   | ||         ||  |  || |   | | |    |||   | | |||  |||     || || ||||| ||||     |      ||  ||| | ||||||||||||||||| ||| |||| |||||| |||   ||||||||||||| |||  ||||||   |||   |||||| || |||||| |
gtgagacgtcgcgtcacggcccctcgctgtccgcccgcgcccccgcgccaccgtttcacgttggattggagctccctgcccctgtccctgtcgtgcgctgcggatgaactggacggggggacggcttcctaatcctaaccgaaatgaatagactaactcatcgctgtgccttgcctgtgctggctggctgcagGGTACCTGATCCCCAAGGGCTGGAAGGTGTTGCCCCTGTTCCGGAACATCCACCACAGCCCCGACCACTTCCCCTGCCCGGACAAGTTCGACCCCTCCCG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcctcgagctttgaaagttgacactgtcaactctggcttgcgtgtgacaaatagATTACATAATCCCCAAGGGCTGGAAAGTGATGCCGCTGTTCAGGATGCTCCACCACAGCCCAGACTTCTTCCCGGACCCATTCAAGTTTGATCCCTCCAG
                agttgac  putative branch site (score: 4)
          tttgaaa  TA-rich tract