1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttgctcgtagtttctgtgtaccttatactgatgtttctttgcagTTATGCAACGCAGAGAACAATGAAAGTCTGTGGCAAAACAATACCGTCGAGTTTACGCGGGATCCATCCTTTGCTCCTTTTGCGAACCTTGGAGATGTGT
species | Selaginella moellendorffii |
transcript | EFJ26212 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCACGAATTAACCGGAAGCTAAAGACTCATCCCAATACGTACTATATAAG TTATGCAACGCAGAGAACAATGAAAGTCTGTGGCAAAACAATACCGTCGAGEST: gi|169058455|gb|FE466352.1|FE466352
genomic: GCACGAATTAACCGGAAGCTAAAGACTCATCCCAATACGTACTATATAAGgtttgctcgt ... ttctttgcagTTATGCAACGCAGAGAACAATGAAAGTCTGTGGCAAAACAATACCGTCGAG
EST: GCACGAATTAACCGGAAGCTAAAGACTCATCCCAATACGTACTATATAAG TTATGCAACGCAGAGAACAATGAAAGTCTGTGGCAAAACAATACCGTCGAGEST: gi|169058348|gb|FE466063.1|FE466063
genomic: GCACGAATTAACCGGAAGCTAAAGACTCATCCCAATACGTACTATATAAGgtttgctcgt ... ttctttgcagTTATGCAACGCAGAGAACAATGAAAGTCTGTGGCAAAACAATACCGTCGAG
EST: GCACGAATTAACCGGAAGCTAAAGACTCATCCCAATACGTACTATATAAG TTATGCAACGCAGAGAACAATGAAAGTCTGTGGCAAAACAATACCGTCGAG
genomic: GCACGAATTAACCGGAAGCTAAAGACTCATCCCAATACGTACTATATAAGgtttgctcgt ... ttctttgcagTTATGCAACGCAGAGAACAATGAAAGTCTGTGGCAAAACAATACCGTCGAG
gtttgctcgtagtttctgtgtaccttatactgatgtttctttgcagTTATGCAACGCAGAGAACAATGAAAGTCTGTGGCAAAACAATACCGTCGAGTTTACGCGGGATCCATCCTTTGCTCCTTTTGCGAACCTTGGAGATGTGT
tactgat putative branch site (score: 16)
tgtttcttt CT-rich tract
ttatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgctcgtagtttctgtgtaccttatactgatgtttctttgcagTTATGCAACGCAGAGAACAATGAAAGTCTGTGGCAAAACAATACCGTCGAGTTTACGCGGGATCCATCCTTTGCTCCTTTTGCGAACCTTGGAGATGTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG