1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtctgtattttgtgtcaatttccatagtgtcgagtttcttattacatgataacgcacagGGTCGGATCATCAATATTTCATCGGTAGTCGGTGTTACTGGGAATGCAGGACAAGCAAACTATAGCGCCGCTAAAGCTGGTGTCATTGGTTTCACGAAAA
species | Selaginella moellendorffii |
transcript | EFJ26070 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG GGTCGGATCATCAATATTTCATCGGTTGTCGGTGTTACTGGGAATGCAGGAEST: gi|169056499|gb|FE464907.1|FE464907
genomic: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAGgtctgtattt ... taacgcacagGGTCGGATCATCAATATTTCATCGGTAGTCGGTGTTACTGGGAATGCAGGA
EST: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG GGTCGGATCATCAATATTTCATCGGTTGTCGGTGTTACTGGGAATGCAGGAEST: gi|169115518|gb|FE518027.1|FE518027
genomic: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAGgtctgtattt ... taacgcacagGGTCGGATCATCAATATTTCATCGGTAGTCGGTGTTACTGGGAATGCAGGA
EST: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG GGTCGGATCATCAATATTTCATCGGTTGTCGGTGTTACTGGGAATGCAGGAEST: gi|169105718|gb|FE508484.1|FE508484
genomic: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAGgtctgtattt ... taacgcacagGGTCGGATCATCAATATTTCATCGGTAGTCGGTGTTACTGGGAATGCAGGA
EST: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG GGTCGGATCATCAATATTTCATCGGTAGTCGGTGTTACTGGGAATGCAGGAEST: gi|169056498|gb|FE464906.1|FE464906
genomic: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAGgtctgtattt ... taacgcacagGGTCGGATCATCAATATTTCATCGGTAGTCGGTGTTACTGGGAATGCAGGA
EST: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG GGTCGGATCATCAATATTTCATCGGTTGTCGGTGTTACTGGGAATGCAGGAEST: gi|169066404|gb|FE474627.1|FE474627
genomic: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAGgtctgtattt ... taacgcacagGGTCGGATCATCAATATTTCATCGGTAGTCGGTGTTACTGGGAATGCAGGA
EST: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG GGTCGGATCATCAATATTTCATCGGTTGTCGGTGTTACTGGGAATGCAGGAEST: gi|70671166|gb|DN839743.1|DN839743
genomic: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAGgtctgtattt ... taacgcacagGGTCGGATCATCAATATTTCATCGGTAGTCGGTGTTACTGGGAATGCAGGA
EST: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG GGTCGGATCATCAATATTTCATCGGTTGTCGGTGTTACTGGGAATGCAGGAEST: gi|169105719|gb|FE508485.1|FE508485
genomic: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAGgtctgtattt ... taacgcacagGGTCGGATCATCAATATTTCATCGGTAGTCGGTGTTACTGGGAATGCAGGA
EST: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAG GGTCGGATCATCAATATTTCATCGGTAGTCGGTGTTACTGGGAATGCAGGA
genomic: GCTGCTACGAAAGTCATGATGAAGAAGAAAAAGgtctgtattt ... taacgcacagGGTCGGATCATCAATATTTCATCGGTAGTCGGTGTTACTGGGAATGCAGGA
gtattttgtgtcaatttccatagtgtcgagtttcttattacatgataacgcacagGGTCGGATCATCAATATTTCATCGGTAGTCGGTGTTACTGGGAATGCAGGACAAGCAAACTATAGCGCCGCTAAAGCTGGTGTCATTGGTTTCACGAAAA
tgataac putative branch site (score: 6)
ttattacatgataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtattttgtgtcaatttccatagtgtcgagtttcttattacatgataacgcacagGGTCGGATCATCAATATTTCATCGGTAGTCGGTGTTACTGGGAATGCAGGACAAGCAAACTATAGCGCCGCTAAAGCTGGTGTCATTGGTTTCACGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG