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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaaaatgcgcaacaaacttcttttactaacatggtattcctagGACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG

Basic information

species Selaginella moellendorffii
transcript EFJ25893
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169042163|gb|FE454206.1|FE454206
EST:     AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAA                         GACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
genomic: AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAAgtacaaaatg ... gtattcctagGACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
EST: gi|169093899|gb|FE493487.1|FE493487
EST:     AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAA                         GACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
genomic: AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAAgtacaaaatg ... gtattcctagGACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
EST: gi|169047127|gb|FE457208.1|FE457208
EST:     AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAA                         GACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
genomic: AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAAgtacaaaatg ... gtattcctagGACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
EST: gi|169040292|gb|FE448370.1|FE448370
EST:     AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAA                         GACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
genomic: AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAAgtacaaaatg ... gtattcctagGACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
EST: gi|169029732|gb|FE437403.1|FE437403
EST:     AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAA                         GACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
genomic: AACTTCCAACAAGATTTGGCTCTGCCACCCTTGGAATTCTTCTCTTTCAAgtacaaaatg ... gtattcctagGACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacaaaatgcgcaacaaacttcttttactaacatggtattcctagGACATTGCTGTCGTACCTTTGCTGGTCATTCTACCAATTCTAGAAACCGGG
                                   tactaac  putative branch site (score: 0)
                                              tattcct  putative PPT
                                ttttactaa  TA-rich tract