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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctgcgagattgggcttggctagccgtctgaaacgtttgctctgcagGATATTGACAAGGAGATAAGTGAGCTTAAGCTCTCTGTGAACACTCGAGGACGCCTGGTTGCGTCTGAGTATCTTAAGCAGTACACATAG

Basic information

species Selaginella moellendorffii
transcript EFJ25650
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ25650 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GRMZM2G112015_T01 (Zea mays), 3'ss of exon 6
-------------------------------------------------------------------------gtgagctgcgagattg-ggcttggcta-gccgtctgaaacgtttgctctgcagGATATTGACAAGGAGATAAGTGAGCTTAAGCTCTCTGTGAACACTCGAGGACGCCTGGTTGCGTCTGAGTATCTTAAGCAGTACACATAG----------
                                                                         ||    ||   | | |  || |    |  |  |          ||  |  |||||||||||||||||||| || ||||| ||||| || || |||||||| || || || || ||  |||| |   | ||||||| |  ||            
gtaagttcatacgcataagcataggcatggctttgagtttgtcgcttgttctcttttggtcgatagatgcaacgttgtttgtatgttggcagcgtactcacactattctgcttacatgaaccccagGATATTGACAAGGAGATCAGCGAGCTGAAGCTGTCAGTAAACACTCGTGGCCGGCTAGTGGCCACTGAATTCTTGAAGCAGTTCTTATGACTCGGCCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagctgcgagattgggcttggctagccgtctgaaacgtttgctctgcagGATATTGACAAGGAGATAAGTGAGCTTAAGCTCTCTGTGAACACTCGAGGACGCCTGGTTGCGTCTGAGTATCTTAAGCAGTACACATAG
                                              tttgctct  CT-rich tract