1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgcatgacgacatgaaatctcttcttaagtttcaatgcgtctctacacagGATACACGCCGCTATCATGGGTAACAAGAGTACAAATTGCTCTGGACGCCGCTAGAGGACTAGAATACATTCATGATCATACAAAGCAGCATTATCTTCA
species | Selaginella moellendorffii |
transcript | EFJ24569 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCGGAAAACAGGTCGCTCAGTGATAGGCTTCATGAGCCGCTTTCTAAAG GATACACGCCGCTATCATGGGTAACAAGAGTACAAATTGCTCTGGACGCCGEST: gi|169113711|gb|FE514804.1|FE514804
genomic: TGCGGAAAACAGGTCGCTCAGTGATAGGCTTCATGAGCCGCTTTCTAAAGgtatgcatga ... ctctacacagGATACACGCCGCTATCATGGGTAACAAGAGTACAAATTGCTCTGGACGCCG
EST: AAACAGGTCGCTCAGTGATAGGCTTCATGAGCCGCTTTCTAAAG GATACACGCCGCTATCATGGGTAACAAGAGTACAAATTGCTCTGGACGCCGEST: gi|169028574|gb|FE439937.1|FE439937
genomic: AAACAGGTCGCTCAGTGATAGGCTTCATGAGCCGCTTTCTAAAGgtatgcatga ... ctctacacagGATACACGCCGCTATCATGGGTAACAAGAGTACAAATTGCTCTGGACGCCG
EST: TGCGGAAAACAGGTCGCTCAGTGATAGGCTTCATGAGCCGCTTTCTAAAG GATACACGCCGCTATCATGGGTAACAAGAGTACAAATTGCTCTGGACGCCG
genomic: TGCGGAAAACAGGTCGCTCAGTGATAGGCTTCATGAGCCGCTTTCTAAAGgtatgcatga ... ctctacacagGATACACGCCGCTATCATGGGTAACAAGAGTACAAATTGCTCTGGACGCCG
gtatgcatgacgacatgaaatctcttcttaagtttcaatgcgtctctacacagGATACACGCCGCTATCATGGGTAACAAGAGTACAAATTGCTCTGGACGCCGCTAGAGGACTAGAATACATTCATGATCATACAAAGCAGCATTATCTTCA
cgtctct CT-rich tract
ttaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcatgacgacatgaaatctcttcttaagtttcaatgcgtctctacacagGATACACGCCGCTATCATGGGTAACAAGAGTACAAATTGCTCTGGACGCCGCTAGAGGACTAGAATACATTCATGATCATACAAAGCAGCATTATCTTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA