1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtttgtccaattcagattttattgtcctagcgttttagtctgttccttcggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGCATCGCAG
species | Selaginella moellendorffii |
transcript | EFJ23963 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAG GAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGCEST: gi|169045070|gb|FE452786.1|FE452786
genomic: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAGgtttgtccaa ... ggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGC
EST: ACCTCTCGGACGTTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAG GAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCTAAGAAAGGCEST: gi|169048713|gb|FE456571.1|FE456571
genomic: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAGgtttgtccaa ... ggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGC
EST: ACCTCTCGGACGTTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAG GAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCTAAGAAAGGCEST: gi|169101759|gb|FE501251.1|FE501251
genomic: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAGgtttgtccaa ... ggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGC
EST: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAG GAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGCEST: gi|70670204|gb|DN838781.1|DN838781
genomic: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAGgtttgtccaa ... ggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGC
EST: ACCTCTCGGACGTTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAG GAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCTAAGAAAGGCEST: gi|169040030|gb|FE447029.1|FE447029
genomic: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAGgtttgtccaa ... ggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGC
EST: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAG GAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGCEST: gi|169078987|gb|FE487640.1|FE487640
genomic: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAGgtttgtccaa ... ggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGC
EST: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAG GAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGCEST: gi|169045069|gb|FE452785.1|FE452785
genomic: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAGgtttgtccaa ... ggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGC
EST: ACCTCTCGGACGTTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAG GAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCTAAGAAAGGCEST: gi|169102806|gb|FE508629.1|FE508629
genomic: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAGgtttgtccaa ... ggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGC
EST: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAG GAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGCEST: gi|169078988|gb|FE487641.1|FE487641
genomic: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAGgtttgtccaa ... ggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGC
EST: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAG GAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGCEST: gi|169048712|gb|FE456570.1|FE456570
genomic: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAGgtttgtccaa ... ggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGC
EST: ACCTCTCGGACGTTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAG GAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCTAAGAAAGGCEST: gi|169101758|gb|FE501250.1|FE501250
genomic: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAGgtttgtccaa ... ggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGC
EST: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAG GAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGC
genomic: ACCTCTCGGACGCTGTCAAGGGAGGCGAGACAGTTTTCCCCTCGTCAGAGgtttgtccaa ... ggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGC
gtccaattcagattttattgtcctagcgttttagtctgttccttcggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGCATCGCAG
ttccttcggtttttt CT-rich tract
attcagattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtccaattcagattttattgtcctagcgttttagtctgttccttcggttttttagGAGGACACCACTGTTAAGGATGACTCCTGGTCCGACTGTGCAAAGAAAGGCATCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA