1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtacgagtaagcaaagcttttgtttcctatctccgggaaggagcttctaacattcctgttccttcttctacgcagGCATGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAATGGGAAGAACAGGACGACTACGAGCAGCCCCGTATGCTCTGGAAACTCATGTCCGAGGAA
species | Selaginella moellendorffii |
transcript | EFJ21541 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCGTACGACAACTTGCCTCAAAACGACCCGACTCAGCCGGATGTTCACCC GTACGAGCATGAAGGTGGAACAGTTGGCCGGTTCCCTCCAAGAAAATGGGAEST: gi|169061632|gb|FE469419.1|FE469419
genomic: TCGTACGACAACTTGCCTCGAAACGACCCGACTCAGCCGGATGTTCACCCgtacgagtaa ... ttctacgcagG--C-A---TGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAATGGGA
EST: TCGTACGACAACTTGCCTCGAAACGACCCGACTCAGCCGGATGTTCACCC GTACGAGCATGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAATGGGAEST: gi|169033314|gb|FE441732.1|FE441732
genomic: TCGTACGACAACTTGCCTCGAAACGACCCGACTCAGCCGGATGTTCACCCgtacgagtaa ... ttctacgcagG--C-A---TGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAATGGGA
EST: TCGTACGACAACTTGCCTCAAAACGACCCGACTCAGCCGGATGTTCACCC GTACGAGCATGAAGGTGGAACAGTTGGCCGGTTCCCTCCAAGAAAATGGGAEST: gi|169100939|gb|FE500891.1|FE500891
genomic: TCGTACGACAACTTGCCTCGAAACGACCCGACTCAGCCGGATGTTCACCCgtacgagtaa ... ttctacgcagG--C-A---TGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAATGGGA
EST: TCGTACGACAACTTGCCTCAAAACGACCCGACTCAGCCGGATGTTCACCC GTACGAGCATGAAGGTGGAACAGTTGGCCGGTTCCCTCCAAGAAAATGGGAEST: gi|169033404|gb|FE442290.1|FE442290
genomic: TCGTACGACAACTTGCCTCGAAACGACCCGACTCAGCCGGATGTTCACCCgtacgagtaa ... ttctacgcagG--C-A---TGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAATGGGA
EST: TCGTACGACAACTTGCCTCAAAACGACCCGACTCAGCCGGATGTTCACCC GTTCGAGCATGAAGGTGGAACAGTTGGCCGGTTCCCTCCAAGAAAATGGGAEST: gi|169018436|gb|FE427245.1|FE427245
genomic: TCGTACGACAACTTGCCTCGAAACGACCCGACTCAGCCGGATGTTCACCCgtacgagtaa ... ttctacgcagG--C-A---TGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAATGGGA
EST: TCGTACGACAACTTGCCTCAAAACGACCCGACTCAGCCGGATGTTCACCC GTACGAGCATGAAGGTGGAACAGTTGGCCGGTTCCCTCCAAGAAAATGGGAEST: gi|169095389|gb|FE497495.1|FE497495
genomic: TCGTACGACAACTTGCCTCGAAACGACCCGACTCAGCCGGATGTTCACCCgtacgagtaa ... ttctacgcagG--C-A---TGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAATGGGA
EST: TCGTACGACAACTTGCCTCAAAACGACCCGACTCAGCCGGATGTTCACCC GTACGAGCATGAAGGTGGAACAGTTGGCCGGTTCCCTCCAAGAAAATGGGAEST: gi|169086910|gb|FE495119.1|FE495119
genomic: TCGTACGACAACTTGCCTCGAAACGACCCGACTCAGCCGGATGTTCACCCgtacgagtaa ... ttctacgcagG--C-A---TGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAATGGGA
EST: TCGTACGACAACTTGCCTCAAAACGACCCGACTCAGCCGGATGTTCACCC GTACGAGCATGAAGGTGGAACAGTTGGCCGGTTCCCTCCAAGAAAATGGGA
genomic: TCGTACGACAACTTGCCTCGAAACGACCCGACTCAGCCGGATGTTCACCCgtacgagtaa ... ttctacgcagG--C-A---TGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAATGGGA
tgtttcctatctccgggaaggagcttctaacattcctgttccttcttctacgcagGCATGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAATGGGAAGAACAGGACGACTACGAGCAGCCCCGTATGCTCTGGAAACTCATGTCCGAGGAA
ttctaac putative branch site (score: 3)
cattcctgttccttct CT-rich tract
taacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgagtaagcaaagcttttgtttcctatctccgggaaggagcttctaacattcctgttccttcttctacgcagGCATGAAGGTGGAACAGTTGACCGGTTCCCTCCAAGAAAATGGGAAGAACAGGACGACTACGAGCAGCCCCGTATGCTCTGGAAACTCATGTCCGAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG