1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaacttattatttgttttctcagaaccgtatcaagtttgatgttacgtaaaagGGCTGCGATTGCTTGGGACATATCAAGTACTTCGATGCGTTTTTGACAAACTACCGGGGCAGCGTGGAGAAGATTGAGAATGCGATCTGTATGCACGAAG
species | Selaginella moellendorffii |
transcript | EFJ21207 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGACGCAGGAGAAGACGGACTTGGAAAGAACGCGCACTCACTCAAGCTG GGCTGCGATTGCTTGGGACATATCAAGTACTTCGATGCGTTTTTGACAAACEST: gi|169072737|gb|FE482274.1|FE482274
genomic: TTGACGCAGGAGAAGACGGACTTGGAAAGAACGCGCACTCACTCAAGCTGgtaaacttat ... tacgtaaaagGGCTGCGATTGCTTGGGACATATCAAGTACTTCGATGCGTTTTTGACAAAC
EST: TTGACGCAGGGGAAGACGGGCTTGGAAAGAACGCGCACTCACTCAAGCTG GGCTGCGATTGCTTGGGACATATCAAGTACTTCGATGCGTTTTTGACAAACEST: gi|169092718|gb|FE493686.1|FE493686
genomic: TTGACGCAGGAGAAGACGGACTTGGAAAGAACGCGCACTCACTCAAGCTGgtaaacttat ... tacgtaaaagGGCTGCGATTGCTTGGGACATATCAAGTACTTCGATGCGTTTTTGACAAAC
EST: TTGACGCAGGGGAAGACGGGCTTGGAAAGAACGCGCACTCACTCAAGCTG GGCTGCGATTGCTTGGGACATATCAAGTACTTCGATGCGTTTTTGACAAACEST: gi|169076432|gb|FE486034.1|FE486034
genomic: TTGACGCAGGAGAAGACGGACTTGGAAAGAACGCGCACTCACTCAAGCTGgtaaacttat ... tacgtaaaagGGCTGCGATTGCTTGGGACATATCAAGTACTTCGATGCGTTTTTGACAAAC
EST: TTGACGCAGGGGAAGACGGGCTTGGAAAGAACGCGCACTCACTCAAGCTG GGCTGCGATTGCTTGNGACATATCAAGTACTTCGATGCGTTTTTGACAAAC
genomic: TTGACGCAGGAGAAGACGGACTTGGAAAGAACGCGCACTCACTCAAGCTGgtaaacttat ... tacgtaaaagGGCTGCGATTGCTTGGGACATATCAAGTACTTCGATGCGTTTTTGACAAAC
gtaaacttattatttgttttctcagaaccgtatcaagtttgatgttacgtaaaagGGCTGCGATTGCTTGGGACATATCAAGTACTTCGATGCGTTTTTGACAAACTACCGGGGCAGCGTGGAGAAGATTGAGAATGCGATCTGTATGCACGAAG
gtttgat putative branch site (score: 4)
ttattatttgttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacttattatttgttttctcagaaccgtatcaagtttgatgttacgtaaaagGGCTGCGATTGCTTGGGACATATCAAGTACTTCGATGCGTTTTTGACAAACTACCGGGGCAGCGTGGAGAAGATTGAGAATGCGATCTGTATGCACGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA