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gttacaagcttgacgatatctacaagtctgaaagttagtctaaaagttttttgctgtagATGGTGGAGCTGTTCTGACTTTCGGATGGGGACTCTACGGCCAG
species | Selaginella moellendorffii |
transcript | EFJ20945 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCGACACAGTGCAATCTTAACAG ATGGTGGAGCTGTTCTGACTTTCGGATGGGGACTCTACGGCCAGEST: gi|169082715|gb|FE486222.1|FE486222
genomic: GGCGACACAGTGCAATCTTAACAGgttacaagct ... tttgctgtagATGGTGGAGCTGTTCTGACTTTCGGATGGGGACTCTACGGCCAG
EST: TTATATAGTTGGAATTGCTTGTGGTGGGCGGCACAGTGCAATCTTAACAG ATGGTGGAGCTGTTCTGACTTTCGGATGGGGACTCTACGGCCAGEST: gi|169096786|gb|FE499802.1|FE499802
genomic: TTATATAGTTGGAATTGCTTGTGGTGGGCGACACAGTGCAATCTTAACAGgttacaagct ... tttgctgtagATGGTGGAGCTGTTCTGACTTTCGGATGGGGACTCTACGGCCAG
EST: TTATATAGTTGGAATTGCTTGTGGTGGGCGACACAGTGCAATCTTAACAG ATGGTGGAGCTGTTCTGACTTTCGGATGGGGACTCTACGGCCAGEST: gi|169061306|gb|FE470393.1|FE470393
genomic: TTATATAGTTGGAATTGCTTGTGGTGGGCGACACAGTGCAATCTTAACAGgttacaagct ... tttgctgtagATGGTGGAGCTGTTCTGACTTTCGGATGGGGACTCTACGGCCAG
EST: TTATATAGTTGGAATTGCTTGTGGTGGGCGGCACAGTGCAATCTTAACAG ATGGTGGAGCTGTTCTGACTTTCGGATGGGGACTCTACGGCCAG
genomic: TTATATAGTTGGAATTGCTTGTGGTGGGCGACACAGTGCAATCTTAACAGgttacaagct ... tttgctgtagATGGTGGAGCTGTTCTGACTTTCGGATGGGGACTCTACGGCCAG
caagcttgacgatatctacaagtctgaaagttagtctaaaagttttttgctgtagATGGTGGAGCTGTTCTGACTTTCGGATGGGGACTCTACGGCCAG
gtctaaa putative branch site (score: 3)
ttttttgct putative PPT
tctaaaagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttacaagcttgacgatatctacaagtctgaaagttagtctaaaagttttttgctgtagATGGTGGAGCTGTTCTGACTTTCGGATGGGGACTCTACGGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT