1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgtggtaaactttgcttttctcgtgatgctcgtccttgttcttactatttagttatacaacacttaaacgagctttactttgtagGTGCTCAAGCGAAACGATTGTAATTTGCCTCCACAAGCTCTTTTTATCATTCGGTACCACTCCTTCTACG
species | Selaginella moellendorffii |
transcript | EFJ20873 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GACTTGACAAGATAGTCATGTCATGGGGCCACGACGAGTATCTGTATCAG GTGCTNCA-GCGAAACGATTGTAATTTGCCTCCACNAGCTCTTTTTATCATEST: gi|169062201|gb|FE469715.1|FE469715
genomic: GACTTGACAAGATAGTCATGTCATGGGGCCACGACGAGTATCTGTATCAGgtgtggtaaa ... tactttgtagGTGCT-CAAGCGAAACGATTGTAATTTGCCTCCACAAGCTCTTTTTATCAT
EST: GACTTGACAAGATAGTCATGTCATGGGGCCACGACGAGTATCTGTATCAG GTGCTCAAGCGAAACGATTGTAATTTGCCTCCACAAGCTCTTTTTATCATTEST: gi|169044880|gb|FE451972.1|FE451972
genomic: GACTTGACAAGATAGTCATGTCATGGGGCCACGACGAGTATCTGTATCAGgtgtggtaaa ... tactttgtagGTGCTCAAGCGAAACGATTGTAATTTGCCTCCACAAGCTCTTTTTATCATT
EST: GACTTGACAAGATAGTCATGTCATGGGGCCACGACGAGTATCTGTATCAG GTGCTCAAGCGAAACGATTGTAATTTGCCTCCACAAGCTCTTTTTATCATT
genomic: GACTTGACAAGATAGTCATGTCATGGGGCCACGACGAGTATCTGTATCAGgtgtggtaaa ... tactttgtagGTGCTCAAGCGAAACGATTGTAATTTGCCTCCACAAGCTCTTTTTATCATT
cgtccttgttcttactatttagttatacaacacttaaacgagctttactttgtagGTGCTCAAGCGAAACGATTGTAATTTGCCTCCACAAGCTCTTTTTATCATTCGGTACCACTCCTTCTACG
ttcttac putative branch site (score: 18)
ctttacttt putative PPT
ttactatttagttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtggtaaactttgcttttctcgtgatgctcgtccttgttcttactatttagttatacaacacttaaacgagctttactttgtagGTGCTCAAGCGAAACGATTGTAATTTGCCTCCACAAGCTCTTTTTATCATTCGGTACCACTCCTTCTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT