1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatttcctggtcctttttttctgttctttcctcacgcgctcgtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGGGGATCGACCTGAAGAAGATCGCCGAGAAGATGAACGGTGCCTCGGGAG
species | Selaginella moellendorffii |
transcript | EFJ20576 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAG TCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGEST: gi|169065602|gb|FE475882.1|FE475882
genomic: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAGgtatttcctg ... gtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGG
EST: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAG TCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGEST: gi|169094801|gb|FE492952.1|FE492952
genomic: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAGgtatttcctg ... gtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGG
EST: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAG TCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGEST: gi|169071822|gb|FE478109.1|FE478109
genomic: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAGgtatttcctg ... gtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGG
EST: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAG TCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGEST: gi|169062819|gb|FE472348.1|FE472348
genomic: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAGgtatttcctg ... gtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGG
EST: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAG TCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGEST: gi|169039782|gb|FE449444.1|FE449444
genomic: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAGgtatttcctg ... gtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGG
EST: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAG TCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGEST: gi|169038427|gb|FE446128.1|FE446128
genomic: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAGgtatttcctg ... gtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGG
EST: GGCCCGGACGAATAGACCGCANGATCGAGTTTCCAAACCCAACTGAAGAG TCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGEST: gi|169055186|gb|FE461060.1|FE461060
genomic: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAGgtatttcctg ... gtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGG
EST: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAG TCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGEST: gi|169038426|gb|FE446127.1|FE446127
genomic: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAGgtatttcctg ... gtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGG
EST: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAG TCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGEST: gi|169113189|gb|FE514435.1|FE514435
genomic: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAGgtatttcctg ... gtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGG
EST: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAG TCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGG
genomic: GGCCCGGACGAATAGACCGCAAGATCGAGTTTCCAAACCCAACTGAAGAGgtatttcctg ... gtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGG
gtatttcctggtcctttttttctgttctttcctcacgcgctcgtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGGGGATCGACCTGAAGAAGATCGCCGAGAAGATGAACGGTGCCTCGGGAG
tcctcac putative branch site (score: 80)
tcctttttttctgttc CT-rich tract
tttttttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcctggtcctttttttctgttctttcctcacgcgctcgtttttccagTCCCGTCTGGATATCCTCAAGATCCATTCGCGCAAGATGAATCTAATGCGGGGGATCGACCTGAAGAAGATCGCCGAGAAGATGAACGGTGCCTCGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG