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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagagccagagtttcttctttctcgggaactcaaaagttcggtttccatccttgcagGATCTCCAGACCGAGAACAATCCATATCTCGGGTTCATCTACACCTTCTTCCAGGAGCGAGCCACCGCCATCTCTCACGGCAACACTGCTCGCCACACGA

Basic information

species Selaginella moellendorffii
transcript EFJ20426
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ20426 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: LOC_Os01g69080.1 (Oryza sativa), 3'ss of exon 2
-------------------------------gtaaagagccagagtttcttctttctcgggaactcaaaagttcggtttccatccttgcagGATCTCCAG---------ACCGAGAACAATCCATATCTCGGGTTCATCTACACCTTCTTCCAGGAGCGAGCCACCGCCATCTCTCACGGCAACACTGCTCGCCACACGA
                                |  |  |    |||  |   |     | ||| ||   ||  |    ||  |   ||||  || |||||         || ||||||||||| ||||| || ||||||||||||| |||||| ||||| || |||  |||||| || || ||||||||||||||  | |
ttttgctctgttctattctgttctgttcacattggactgtttaagtggcaattgagcagagaaatctgtagcacttactcttttgctgcatcatttccagGACCCTAGGACAGAGAACAATCCTTATCTTGGATTCATCTACACCTCCTTCCAAGAGCGTGCGACCTTCATCTCACATGGGAACACTGCTCGCCATGCCA

upper sequence: EFJ20426 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: LOC_Os02g30200.1 (Oryza sativa), 3'ss of exon 3
-----------------------------gtaaagagccagagtttcttctttctcgggaactcaaaa------gttcggtttccatc----cttgca-gGATCTCCAGACCGAGAACAATCCATATCTCGGGTTCATCTACACCTTCTTCCAGGAGCGAGCCACCGCCATCTCTCACGGCAACACTGCTCGCCACACGA
                               | | | ||| | | | |   |       || ||||        | | |||||   |     |||||| |||||  |  || |||||| | || ||  | ||||||||||||||    ||||||||||| |||||| ||||||| ||||||||||| || |||||| || 
tcgctgcagtgcatctagaaagttttactcaacacacccaaaatgtttggctagatttcaattcaatgttgtttgcttggttttggttgcaacttgcaagGATCCACGAACGGAGAACGACCCGTACATGGGGTTCATCTACACGACGTTCCAGGAGCGCGCCACCTCCATCTCCCACGGCAACACGGCGCGCCACGCGG

upper sequence: EFJ20426 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GRMZM5G852502_T01 (Zea mays), 3'ss of exon 2
-----------------------------gtaaagagccagagtttcttct-----ttctcgggaactcaaaagttcggtttccat------ccttgcagGATCTCCAGACCGAGAACAATCCATATCTCGGGTTCATCTACACCTTCTTCCAGGAGCGAGCCACCGCCATCTCTCACGGCAACACTGCTCGCCACACGA
                              |||| |        ||||| |     |    | | ||| | | || |  | |  |       | || |||||||    ||| ||||| ||||| ||||| || ||||||||||||| |||||| ||||| || |||  |||||| ||||| ||||||||||| ||| | |
atcttttgttcacttcgtttttttcttctttaaatataggctacttcttataaatatgtaggaggactaatatgtactttctttactgtgtccttttcagGATCCTAGGACTGAGAATAATCCTTATCTTGGTTTCATCTACACCTCCTTCCAAGAGCGGGCGACCTTCATCTCACACGGGAACACTGCTCGTCACGCCA

upper sequence: EFJ20426 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: GRMZM2G180399_T01 (Zea mays), 3'ss of exon 2
------------------------------gtaaagagccaga--gtttcttctttctcgggaactcaaaagttcggtttccat--------ccttgcagGATCTCCAGACCGAGAACAATCCATATCTCGGGTTCATCTACACCTTCTTCCAGGAGCGAGCCACCGCCATCTCTCACGGCAACACTGCTCGCCACACGA
                               | |||| | |      |  || |  ||  | |   | ||  |   ||| |  |        | || |||||||    ||| ||||| ||||| ||||| || ||||||||||||| |||||| ||||| || |||  |||||| || || ||||||||||| ||  | |
gatgattatttctcttttgtactttgtttttttaagatctatgctactgattataactatgtaggactaatatgtagttcctttactgagtccttttcagGATCCTAGGACTGAGAATAATCCTTATCTTGGTTTCATCTACACCTCCTTCCAAGAGCGGGCGACCTTCATCTCGCATGGGAACACTGCTCGTCATGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagccagagtttcttctttctcgggaactcaaaagttcggtttccatccttgcagGATCTCCAGACCGAGAACAATCCATATCTCGGGTTCATCTACACCTTCTTCCAGGAGCGAGCCACCGCCATCTCTCACGGCAACACTGCTCGCCACACGA
                                        tttccatcctt  CT-rich tract
                              aaaagtt  TA-rich tract