1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttgtttgcctctttgttttctcgagcaactactaaactcctcgcattcttctttcagGTTGTCCGCGCTCTAGAAAGCGATGGAGCAATCTCCGACCTCAACCAAGGAGTAAAGCCAGGCCACAGCTCGAACTTCACGAGCGCGGACTACGATAGCA
species | Selaginella moellendorffii |
transcript | EFJ19890 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGCAGCCTGCGTTCGACACTCAGCCAGCANACGCCCAAGGATGGCACAG GTTGTCCGCGCTCTAGAAAGCGATGGAGCAATCTCCEST: gi|169022834|gb|FE430238.1|FE430238
genomic: CTGCAGCCTGCGTTCGACACTCAGCCAGCAAACGCCCAAGGATGGCACAGgtttgtttgc ... cttctttcagGTTGTCCGCGCTCTAGAAAGCGATGGAGCAATCTCC
EST: CTGCAGCCTGCGTTCGACACTCAGCCAGCAAACGCCCAAGGATGGCACAG GTTGTCCGCGCTCTAGAAAGCGATGGAGCAATCTCCGACCTCAACCAAGGAEST: gi|169022835|gb|FE430239.1|FE430239
genomic: CTGCAGCCTGCGTTCGACACTCAGCCAGCAAACGCCCAAGGATGGCACAGgtttgtttgc ... cttctttcagGTTGTCCGCGCTCTAGAAAGCGATGGAGCAATCTCCGACCTCAACCAAGGA
EST: CTGCAGCCTGCGTTCGACACTCAGCCAGCAAACGCCCCAGGATGGCACAG GTTGTCCGCGCTCTAGAAAGCGATGGAGCAATCTCCGACCEST: gi|169019313|gb|FE427623.1|FE427623
genomic: CTGCAGCCTGCGTTCGACACTCAGCCAGCAAACGCCCAAGGATGGCACAGgtttgtttgc ... cttctttcagGTTGTCCGCGCTCTAGAAAGCGATGGAGCAATCTCCGACC
EST: CTGCAGCCTGCGTTCGACACTCAGCCAGCAAACGCCCAAGGATGGCACAG GTTGTCCGCGCTCTAGAAAGCGATGGAGCAATCTCCGGCCTCAACCAAGGA
genomic: CTGCAGCCTGCGTTCGACACTCAGCCAGCAAACGCCCAAGGATGGCACAGgtttgtttgc ... cttctttcagGTTGTCCGCGCTCTAGAAAGCGATGGAGCAATCTCCGACCTCAACCAAGGA
gtttgcctctttgttttctcgagcaactactaaactcctcgcattcttctttcagGTTGTCCGCGCTCTAGAAAGCGATGGAGCAATCTCCGACCTCAACCAAGGAGTAAAGCCAGGCCACAGCTCGAACTTCACGAGCGCGGACTACGATAGCA
tactaaa putative branch site (score: 8)
ctcctcgcattcttct CT-rich tract
tttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtttgcctctttgttttctcgagcaactactaaactcctcgcattcttctttcagGTTGTCCGCGCTCTAGAAAGCGATGGAGCAATCTCCGACCTCAACCAAGGAGTAAAGCCAGGCCACAGCTCGAACTTCACGAGCGCGGACTACGATAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC