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gtaagttagttattcggtgatcgtgcttacttgagtcatactttgtcacagATCTGGGGTTGCAACAGCCTAGGCTCGAAGGAGAAGATTACTTAGCTGTAATCGACGAGTTCATGGAAGGTGTTTTCACACGCTGGCCACATGTAATCGT
species | Selaginella moellendorffii |
transcript | EFJ19450 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATGATCGATGTCGGGACAAACAATAAAAAATTGTTAGATGATCCTTTGT ATCTGGGGTTTGCA-CAGCCTAGGCTCGAAGGEST: gi|169088831|gb|FE494395.1|FE494395
genomic: AATGATCGATGTCGGGACAAACAATAAAAAATTGTTAGATGATCCTTTGTgtaagttagt ... tttgtcacagATCTGGGGTT-GCAACAGCCTAGGCTCGAAGG
EST: AATGATCGATGTCGGGACAAACAATAAAAAATTGTTAGATGATCCTTTGT ATCTGGGGTTGCAACAGCCTAGGCTCGAAGGAGAAGATTACTTAGCTGTAAEST: gi|169073338|gb|FE481102.1|FE481102
genomic: AATGATCGATGTCGGGACAAACAATAAAAAATTGTTAGATGATCCTTTGTgtaagttagt ... tttgtcacagATCTGGGGTTGCAACAGCCTAGGCTCGAAGGAGAAGATTACTTAGCTGTAA
EST: AATGATCGATGTCGGGACAAACAATAAAAAATTGTTAGATGATCCTTTGT ATCTGGGGTTGCAACAGCCTAGGCTCGAAGGAGAAGATTACTTAGCTGTAAEST: gi|169022198|gb|FE431807.1|FE431807
genomic: AATGATCGATGTCGGGACAAACAATAAAAAATTGTTAGATGATCCTTTGTgtaagttagt ... tttgtcacagATCTGGGGTTGCAACAGCCTAGGCTCGAAGGAGAAGATTACTTAGCTGTAA
EST: AATGATCGATGTCGGGACAAACAATAAAAAATTGTTAGATGATCCTTTGT ATCTGGNGTTGCAACAGCCTAGGCTCGAAGGAGAAGATTACTTAGCTGTAA
genomic: AATGATCGATGTCGGGACAAACAATAAAAAATTGTTAGATGATCCTTTGTgtaagttagt ... tttgtcacagATCTGGGGTTGCAACAGCCTAGGCTCGAAGGAGAAGATTACTTAGCTGTAA
gtaagttagttattcggtgatcgtgcttacttgagtcatactttgtcacagATCTGGGGTTGCAACAGCCTAGGCTCGAAGGAGAAGATTACTTAGCTGTAATCGACGAGTTCATGGAAGGTGTTTTCACACGCTGGCCACATGTAATCGT
tgcttac putative branch site (score: 9)
ctttgtc putative PPT
ttagttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttagttattcggtgatcgtgcttacttgagtcatactttgtcacagATCTGGGGTTGCAACAGCCTAGGCTCGAAGGAGAAGATTACTTAGCTGTAATCGACGAGTTCATGGAAGGTGTTTTCACACGCTGGCCACATGTAATCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG