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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatctgcctttttgctgttatgcttaccgtgactctctcgaacagGAAATTACGGGCATCTACACCAATAATTTCGACTTGGCGCTGAACACCAAAAATGGTTTTCCTGTGTTCGCTACTGTTGTCGAGGCCAATCACGTCAGCA

Basic information

species Selaginella moellendorffii
transcript EFJ17122
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ17122 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: PP1S28_266V6.1 (Physcomitrella patens), 3'ss of exon 7
----------------------------------------------------------------------------------------------------------------------------------gtaaggatctgccttt---ttgctgttatgcttaccgtgactctctcgaacagGAAATTACGGGCATCTACACCAATAATTTCGACTTGGCGCTGAACACCAAAAATGGTTTTCCTGTGTTCGCTACTGTTGTCGAGGCCAATCACGTCAGCA
                                                                                                                                   |||   |  |  |||   |||||  | ||  | ||   |     |    |||||| | || ||||| |||   || || || ||||  ||  ||||||| ||||||||||| ||||||||||| ||||| || ||||| ||| | ||    |
gtgagtgttctggcattagttttgtccgtctttgaagaagccattatccaatagtctacaactttacgcttattaaaatatgtgtagtaaagttctttttgtctattgtcggaaactgcgataataaaaaataaattttaggttttgatttgcttctctgggtgccaacatctcatgtttcagGAAGTAACTGGCATATACGTGAACAACTTTGACTCTGCATTGAACACAAAAAATGGTTTCCCTGTGTTCGCGACTGTGGTGGAGGCTAATTATGTGCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaggatctgcctttttgctgttatgcttaccgtgactctctcgaacagGAAATTACGGGCATCTACACCAATAATTTCGACTTGGCGCTGAACACCAAAAATGGTTTTCCTGTGTTCGCTACTGTTGTCGAGGCCAATCACGTCAGCA
                              tgcttac  putative branch site (score: 2)
                                          ctctctc  putative PPT
                  ttttt  TA-rich tract