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gtaaattgttttcaaataccatagacttgttagtttgtcgtcgattgtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
species | Selaginella moellendorffii |
transcript | EFJ15233 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACG GGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACGEST: gi|70669827|gb|DN838404.1|DN838404
genomic: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACGgtaaattgtt ... gtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
EST: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACG GGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACGEST: gi|169078264|gb|FE487333.1|FE487333
genomic: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACGgtaaattgtt ... gtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
EST: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACG GGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACGEST: gi|169042434|gb|FE453437.1|FE453437
genomic: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACGgtaaattgtt ... gtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
EST: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACG GGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACGEST: gi|169065621|gb|FE474328.1|FE474328
genomic: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACGgtaaattgtt ... gtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
EST: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACG GGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACGEST: gi|169065620|gb|FE474327.1|FE474327
genomic: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACGgtaaattgtt ... gtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
EST: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACG GGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACGEST: gi|169062994|gb|FE471100.1|FE471100
genomic: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACGgtaaattgtt ... gtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
EST: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACG GGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACGEST: gi|169045906|gb|FE453920.1|FE453920
genomic: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACGgtaaattgtt ... gtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
EST: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACG GGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACGEST: gi|169049163|gb|FE457151.1|FE457151
genomic: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACGgtaaattgtt ... gtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
EST: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACG GGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACGEST: gi|169062995|gb|FE471101.1|FE471101
genomic: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACGgtaaattgtt ... gtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
EST: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACG GGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACGEST: gi|169049164|gb|FE457152.1|FE457152
genomic: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACGgtaaattgtt ... gtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
EST: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACG GGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACGEST: gi|169042435|gb|FE453438.1|FE453438
genomic: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACGgtaaattgtt ... gtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
EST: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACG GGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACGEST: gi|169045907|gb|FE453921.1|FE453921
genomic: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACGgtaaattgtt ... gtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
EST: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACG GGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
genomic: TGCAATGTACGAATCGGATGAAATCATCAAGTACCTTGTAGATAAATACGgtaaattgtt ... gtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
taaattgttttcaaataccatagacttgttagtttgtcgtcgattgtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
ttgtttttcc CT-rich tract
ttttcaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattgttttcaaataccatagacttgttagtttgtcgtcgattgtttttccagGGAATGGGAAGGTGCCTTTTATGCTGTCACTGGGTTTCTTCACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG