1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaagtaatctagctatctagcaaaatcataacggcttgaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCATAGCAATCTTAAGAGATATTTTGCACCGTTACAACATGAAGCACGGCAAT
species | Selaginella moellendorffii |
transcript | EFJ15215 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAA GTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCATEST: gi|169080243|gb|FE489416.1|FE489416
genomic: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAAgtaagtaatc ... gaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCAT
EST: TGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTNCA- GTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCAEST: gi|169088483|gb|FE493852.1|FE493852
genomic: TGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCT-CAAgtaagtaatc ... gaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCA
EST: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAA GTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCATEST: gi|169101693|gb|FE500704.1|FE500704
genomic: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAAgtaagtaatc ... gaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCAT
EST: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAA GTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCATEST: gi|169114118|gb|FE516797.1|FE516797
genomic: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAAgtaagtaatc ... gaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCAT
EST: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAA GTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCATEST: gi|169031346|gb|FE437691.1|FE437691
genomic: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAAgtaagtaatc ... gaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCAT
EST: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAA GTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCATEST: gi|169033040|gb|FE441374.1|FE441374
genomic: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAAgtaagtaatc ... gaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCAT
EST: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAA GTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCATEST: gi|169021621|gb|FE428838.1|FE428838
genomic: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAAgtaagtaatc ... gaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCAT
EST: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAA GTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCATEST: gi|169030874|gb|FE440313.1|FE440313
genomic: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAAgtaagtaatc ... gaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCAT
EST: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAA GTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCATEST: gi|169061545|gb|FE469332.1|FE469332
genomic: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAAgtaagtaatc ... gaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCAT
EST: GTGCTTGGTGTCGAAAGTCCATATGGACACGAGTCTGACTACTACCTCAA GTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCATEST: gi|169088446|gb|FE495492.1|FE495492
genomic: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAAgtaagtaatc ... gaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCAT
EST: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAA GTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCATEST: gi|169029980|gb|FE440498.1|FE440498
genomic: GTGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTCAAgtaagtaatc ... gaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCAT
EST: TGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCTNCA- GTATGAAGCATTGGTCCTGGTAGCCGGCGGEST: gi|169083576|gb|FE495361.1|FE495361
genomic: TGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCT-CAAgtaagtaatc ... gaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGG
EST: TGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACCCTCA- GTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCA
genomic: TGCTTGGTGTCGAAGGTCCATATGGACACGAGTCTGACTACTACC-TCAAgtaagtaatc ... gaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCA
gtaagtaatctagctatctagcaaaatcataacggcttgaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCATAGCAATCTTAAGAGATATTTTGCACCGTTACAACATGAAGCACGGCAAT
tcataac putative branch site (score: 26)
ttttt putative PPT
ttgaattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaatctagctatctagcaaaatcataacggcttgaatttttagGTATGAAGCATTGGTCCTGGTAGCCGGCGGAATAGGAGTCTCACCTTTCATAGCAATCTTAAGAGATATTTTGCACCGTTACAACATGAAGCACGGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC