1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgaaagtcttgttaatcatatcaagcaaaagcttttgcggtgcaaatctaaagcctgcctgagcagGATCTCGCCACGCTGGTCCCAGGCCTGGAGCACGCAGGAGTCGACTTGCTCTCC
species | Selaginella moellendorffii |
transcript | EFJ15022 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGACGTCCCTGCCGGATTTTAAGAGTGCGTTTCCAAAGTGGCTTCCAAAG GATCTCGCCACGCTGGTCCCAGGCCTGGAGCATGCAGGAGTCGACTTGCTCEST: gi|169019992|gb|FE430849.1|FE430849
genomic: TGACGTCCCTGCCGGATTTTAAGAGTGCGTTTCCAAAGTGGCTTCCAAAGgtgaaagtct ... gcctgagcagGATCTCGCCACGCTGGTCCCAGGCCTGGAGCACGCAGGAGTCGACTTGCTC
EST: TGACGTCCCTGCCGGATTTTAAGAGTGCGTTTCCAAAGTGGCTTCCAAAG GATCTCGCCACGCTGGTCCCAGGCCTGGAGCACGCAGGAGTCGACTTGCTC
genomic: TGACGTCCCTGCCGGATTTTAAGAGTGCGTTTCCAAAGTGGCTTCCAAAGgtgaaagtct ... gcctgagcagGATCTCGCCACGCTGGTCCCAGGCCTGGAGCACGCAGGAGTCGACTTGCTC
ttaatcatatcaagcaaaagcttttgcggtgcaaatctaaagcctgcctgagcagGATCTCGCCACGCTGGTCCCAGGCCTGGAGCACGCAGGAGTCGACTTGCTCTCC
atctaaa putative branch site (score: 25)
cctgcct CT-rich tract
aaatctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaagtcttgttaatcatatcaagcaaaagcttttgcggtgcaaatctaaagcctgcctgagcagGATCTCGCCACGCTGGTCCCAGGCCTGGAGCACGCAGGAGTCGACTTGCTCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA