1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttcgccgcttcctctcttatgcttcatatctctcacacgcctttgcctttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGATACGGCAACAAGTATCCCAAGCAAGTACACCACCGAGCGGCATCCATCC
species | Selaginella moellendorffii |
transcript | EFJ15004 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAG GTGGACTACATTCTGGGAAAGAACCCGCGGAAGATGAGCTACGTCGTGGGAEST: gi|169075888|gb|FE483340.1|FE483340
genomic: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgct ... ttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
EST: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAG GTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGAEST: gi|169109199|gb|FE512805.1|FE512805
genomic: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgct ... ttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
EST: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAG GTGGACTACATTCTGGGAAAGAACCCGCGGAAGATGAGCTACGTCGTGGGAEST: gi|169064501|gb|FE472584.1|FE472584
genomic: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgct ... ttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
EST: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAG GTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGAEST: gi|169076552|gb|FE484659.1|FE484659
genomic: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgct ... ttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
EST: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAG GTGGACTACATTCTGGGAAAGAACCCGCGGAAGATGAGCTACGTCGTGGGAEST: gi|169063345|gb|FE472179.1|FE472179
genomic: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgct ... ttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
EST: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAG GTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
genomic: GCTCTCAGTTCTACACAGCAGACACAATGCGCAACTTTGCGAAATCCCAGgttcgccgct ... ttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGA
gccgcttcctctcttatgcttcatatctctcacacgcctttgcctttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGATACGGCAACAAGTATCCCAAGCAAGTACACCACCGAGCGGCATCCATCC
ctctcac putative branch site (score: 42)
cgcctttgcctttctc CT-rich tract
ttcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgccgcttcctctcttatgcttcatatctctcacacgcctttgcctttctccacagGTGGACTACATTCTGGGCAAGAACCCGCGAAAGATGAGCTACGTCGTGGGATACGGCAACAAGTATCCCAAGCAAGTACACCACCGAGCGGCATCCATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG