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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgctatgagtttagagcaccacgtgacaaattcgtttgcagGAAAGCAAAGTTGGGGAGCCTTTCTGGGATTCCCCATGGGGACCTGGCCGTCCTGGTTGGCACATCGAGTGCTCGGCTATGGCCAGTGACGTTATTGGGG

Basic information

species Selaginella moellendorffii
transcript EFJ14506
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ14506 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: PP1S83_56V6.1 (Physcomitrella patens), 3'ss of exon 2
--------------------------------------------------------------------------------------------------------------------gtacg-ctatgagtttagagcaccacgtgacaaattcgtt-tgcagGAAAGCAAAGTTGGGGAGCCTTTCTGGGATTCCCCATGGGGACCTGGCCGTCCTGGTTGGCACATCGAGTGCTCGGCTATGGCCAGTGACGTTATTGGGG
                                                                                                                    ||  | |  |  ||| |    |    || ||| ||   |    ||| |||| ||   ||| || ||||  |||||||| || ||||| || || ||||| || |||||||| ||||| ||||| |||||||||||| |  | || |
gtgagtggtctcaaactggacgtcacgtagggagaaatgagaggagtttgattgctttgatctatattgataaggagctatgtaatgatgtgcagcatggatttgtcagcttgtatgtgtgaccgtttgttgacgcgatgttgtaacatatggatggcccagAAAAGTAAGCCTGGAGAACCTTCATGGGATTCTCCTTGGGGCCCGGGACGTCCAGGCTGGCACATTGAGTGTTCGGCAATGGCCAGTGACATACTGGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169030792|gb|FE438138.1|FE438138
EST:     ACTTCAAAACCAGAAACAAGAAAAACAATAACGACTTCGCGTTATGGAAG                         GAAAGCAAAGTTGGGGAGCCTTTCTGGGATTCTCCATGGGGACCTGGCCGT
genomic: ACTTCAAAACCAGAAACAAGAAAAACAATAACGACTTCGCGTTATGGAAGgtacgctatg ... tcgtttgcagGAAAGCAAAGTTGGGGAGCCTTTCTGGGATTCCCCATGGGGACCTGGCCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacgctatgagtttagagcaccacgtgacaaattcgtttgcagGAAAGCAAAGTTGGGGAGCCTTTCTGGGATTCCCCATGGGGACCTGGCCGTCCTGGTTGGCACATCGAGTGCTCGGCTATGGCCAGTGACGTTATTGGGG
                                                      ttcgttt  CT-rich tract
                                       acaaatt  TA-rich tract