1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaactccaaagtttgcatcgtcccatcttattctttcgcttcttagATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCAAGGCGACCATTGTGGCTTGTGAAGCGGCCGATAAGGCTGTTAAG
species | Selaginella moellendorffii |
transcript | EFJ14459 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAATCGGTGAGAAGGCGCGGGACGCCATTCTCAGCAAAAAGTTTGATCAG ATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCEST: gi|169051797|gb|FE460032.1|FE460032
genomic: AAATCGGTGAGAAGGCGCGGGACGCCATTCTCAGCAAAAAGTTTGATCAGgtaactccaa ... cgcttcttagATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTC
EST: AAATCGGTGAGAAGGCGCGGGACGCCATTCTCAGCAAAAAGTTTGATCAG ATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCEST: gi|169064549|gb|FE472632.1|FE472632
genomic: AAATCGGTGAGAAGGCGCGGGACGCCATTCTCAGCAAAAAGTTTGATCAGgtaactccaa ... cgcttcttagATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTC
EST: AAATCGGTGAGAAGGCGCGGGACGCCATTCTCAGCAAAAAGTTTGATCAG ATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCEST: gi|169081909|gb|FE487964.1|FE487964
genomic: AAATCGGTGAGAAGGCGCGGGACGCCATTCTCAGCAAAAAGTTTGATCAGgtaactccaa ... cgcttcttagATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTC
EST: AAATCGGTGAGAAGGCGCGGGACGCCATTCTCAGCAAAAAGTTTGATCAG ATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCEST: gi|169026519|gb|FE435820.1|FE435820
genomic: AAATCGGTGAGAAGGCGCGGGACGCCATTCTCAGCAAAAAGTTTGATCAGgtaactccaa ... cgcttcttagATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTC
EST: AAATCGGTGAGAAGGCGCGGGACGCCATTCTCAGCAAAAAGTTTGATCAG ATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTC
genomic: AAATCGGTGAGAAGGCGCGGGACGCCATTCTCAGCAAAAAGTTTGATCAGgtaactccaa ... cgcttcttagATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTC
gtaactccaaagtttgcatcgtcccatcttattctttcgcttcttagATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCAAGGCGACCATTGTGGCTTGTGAAGCGGCCGATAAGGCTGTTAAG
tcgtcccatcttattc CT-rich tract
ttattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactccaaagtttgcatcgtcccatcttattctttcgcttcttagATAAGGGTTAATTTACCCAATGGTGACATGGTTGGTCACACTGGAGATCTCAAGGCGACCATTGTGGCTTGTGAAGCGGCCGATAAGGCTGTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT