1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtttggctcggccctcgtttgaggcacatctttctaaaacacccttcgttttggtgccccagAATGTGAAAGCTGTGTTCGACGCGGCAATCAAGGTGGTGTTGCAACCTCCAAAGCAGAAGAAACGAAAGAAGAAGCAACGGGGCTGTACAGTGCTGTGAC
species | Selaginella moellendorffii |
transcript | EFJ11645 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGCAAATCGGGGCGGCTGCCTACATCGAGTGTAGCTCAAAGACGCAGCAG AATGTGAAAGCTGTGTTCGACGCGGCAATCAAGGTGGTGTTGCAACCTCCAEST: gi|169034528|gb|FE444575.1|FE444575
genomic: AGCAAATCGGGGCGGCTGCCTACATCGAGTGTAGCTCAAAGACGCAGCAGgtttggctcg ... ggtgccccagAATGTGAAAGCTGTGTTCGACGCGGCAATCAAGGTGGTGTTGCAACCTCCA
EST: AGCAAATCGGGGCGGCTGCCTACATCGAGTGTAGCTCAAAGACGCAGCAG AATGTGAAAGCTGTGTTCGACGCGGCAATCAAGGTGGTGTTGCAACCTCCAEST: gi|169037117|gb|FE444402.1|FE444402
genomic: AGCAAATCGGGGCGGCTGCCTACATCGAGTGTAGCTCAAAGACGCAGCAGgtttggctcg ... ggtgccccagAATGTGAAAGCTGTGTTCGACGCGGCAATCAAGGTGGTGTTGCAACCTCCA
EST: AGCAAATCGGGGCGGCTGCCTACATCGAGTGTAGCTCAAAGACGCAGCAG AATGTGAAAGCTGTGTTCGACGCGGCAATCAAGGTGGTGTTGCAACCTCCAEST: gi|169058887|gb|FE467694.1|FE467694
genomic: AGCAAATCGGGGCGGCTGCCTACATCGAGTGTAGCTCAAAGACGCAGCAGgtttggctcg ... ggtgccccagAATGTGAAAGCTGTGTTCGACGCGGCAATCAAGGTGGTGTTGCAACCTCCA
EST: AGCAAATCGGGGCGGCTGCCTACATCGAGTGTAGCTCAAAGACGCAGCAG AATGTGAAAGCTGTGTTCGACGCGGCAATCAAGGTGGTGTTGCAACCTCCA
genomic: AGCAAATCGGGGCGGCTGCCTACATCGAGTGTAGCTCAAAGACGCAGCAGgtttggctcg ... ggtgccccagAATGTGAAAGCTGTGTTCGACGCGGCAATCAAGGTGGTGTTGCAACCTCCA
tcggccctcgtttgaggcacatctttctaaaacacccttcgttttggtgccccagAATGTGAAAGCTGTGTTCGACGCGGCAATCAAGGTGGTGTTGCAACCTCCAAAGCAGAAGAAACGAAAGAAGAAGCAACGGGGCTGTACAGTGCTGTGAC
ttctaaa putative branch site (score: 27)
tttctaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggctcggccctcgtttgaggcacatctttctaaaacacccttcgttttggtgccccagAATGTGAAAGCTGTGTTCGACGCGGCAATCAAGGTGGTGTTGCAACCTCCAAAGCAGAAGAAACGAAAGAAGAAGCAACGGGGCTGTACAGTGCTGTGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA