1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaagtgcttttgtgctttctatcatcgagcgcggtcttgtcactcttgtcttttttacagGAAGAGCTCGACAGCATGGTAAAGAAATTCCCGGGCCGCTTTGGAGTGTACTACGTACTAAATGAC
species | Selaginella moellendorffii |
transcript | EFJ10977 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGATCTTCCTCATCTATGGGAACGTGACATATGACGATATATTGCTCAAG GAAGAGCTCGACAGCATGGTAAAGAA-TTCCCGGGCCGCTTTGGAGTGTACEST: gi|169019848|gb|FE426935.1|FE426935
genomic: AGATCTTCCTCATCTATGGGAACGTGACATATGACGATATATTGCTCAAGgtaaagtgct ... ttttttacagGAAGAGCTCGACAGCATGGTAAAGAAATTCCCGGGCCGCTTTGGAGTGTAC
EST: AGATCTTCCTCATCTATGGGAACGTGACATATGACGATATATTGCTCAAG GAAGAGCTCGACAGCATGGTAAAGAAATTCCEST: gi|169019847|gb|FE426934.1|FE426934
genomic: AGATCTTCCTCATCTATGGGAACGTGACATATGACGATATATTGCTCAAGgtaaagtgct ... ttttttacagGAAGAGCTCGACAGCATGGTAAAGAAATTCC
EST: AGATCTTCCTCATCTATGGGAACGTGACATATGACGATATATTGCTCAAG GAAGAGCTCGACAGCATGGTAAAGAAATTCCCGGGCCGCTTTGGAGTGTACEST: gi|169106161|gb|FE507953.1|FE507953
genomic: AGATCTTCCTCATCTATGGGAACGTGACATATGACGATATATTGCTCAAGgtaaagtgct ... ttttttacagGAAGAGCTCGACAGCATGGTAAAGAAATTCCCGGGCCGCTTTGGAGTGTAC
EST: AGATCTTCCTCATCTATGGGAACGTGACATATGACGATATATTGCTCAAG GAAGAGCTCGACAGCATGGTAAAGAAATTCCCGGGCCGCTTTGGAGTGTAC
genomic: AGATCTTCCTCATCTATGGGAACGTGACATATGACGATATATTGCTCAAGgtaaagtgct ... ttttttacagGAAGAGCTCGACAGCATGGTAAAGAAATTCCCGGGCCGCTTTGGAGTGTAC
gcttttgtgctttctatcatcgagcgcggtcttgtcactcttgtcttttttacagGAAGAGCTCGACAGCATGGTAAAGAAATTCCCGGGCCGCTTTGGAGTGTACTACGTACTAAATGAC
tcttgtcactcttgtc CT-rich tract
tctttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagtgcttttgtgctttctatcatcgagcgcggtcttgtcactcttgtcttttttacagGAAGAGCTCGACAGCATGGTAAAGAAATTCCCGGGCCGCTTTGGAGTGTACTACGTACTAAATGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG