1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagagattcagattcctctaatcctgatcgtcgatttcttttgttcatcgtggttccttgtttcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGCTCCGCATCAGCGTATTCACATGTCTCTCTCCTCAGACATTTTGCTCCAA
species | Selaginella moellendorffii |
transcript | EFJ10940 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCGGAA GTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGCEST: gi|169029497|gb|FE438897.1|FE438897
genomic: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAAgtaagagatt ... tcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGC
EST: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAA GTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGCEST: gi|169041054|gb|FE450354.1|FE450354
genomic: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAAgtaagagatt ... tcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGC
EST: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAA GTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGCEST: gi|169024460|gb|FE434385.1|FE434385
genomic: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAAgtaagagatt ... tcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGC
EST: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAA GTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGCEST: gi|169106433|gb|FE507445.1|FE507445
genomic: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAAgtaagagatt ... tcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGC
EST: CTTTGGCAGCA-TGATATTTCTCGTTCATTCTCTTGCGAATGGTCCGGAA GTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGCEST: gi|169041055|gb|FE450355.1|FE450355
genomic: CTTTGGCAGCATTGATA-TTCTCGTTCATTCTCTTGCGAATGGTCCAGAAgtaagagatt ... tcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGC
EST: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAA GTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGCEST: gi|169069401|gb|FE480524.1|FE480524
genomic: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAAgtaagagatt ... tcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGC
EST: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAA GTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGCEST: gi|169083532|gb|FE495876.1|FE495876
genomic: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAAgtaagagatt ... tcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGC
EST: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCGGAA GTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGCEST: gi|169069400|gb|FE480523.1|FE480523
genomic: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAAgtaagagatt ... tcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGC
EST: CTTTGGCAGCATTGATATTCTCGTTCATTCTC-TGNCGAATGGTCCAGAA GTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGCEST: gi|169039555|gb|FE449945.1|FE449945
genomic: CTTTGGCAGCATTGATATTCTCGTTCATTCTCTTG-CGAATGGTCCAGAAgtaagagatt ... tcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGC
EST: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCGGAA GTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGGATAC-TCGCGGCTAGEST: gi|169106434|gb|FE507446.1|FE507446
genomic: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAAgtaagagatt ... tcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGG-ATACCTCGCGGCTAG
EST: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCGGAA GTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATAC-TCGCGGCTAGC
genomic: ACTTTGGCAGCATTGATATTCTCGTTCATTCTCTTGCGAATGGTCCAGAAgtaagagatt ... tcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGC
ctaatcctgatcgtcgatttcttttgttcatcgtggttccttgtttcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGCTCCGCATCAGCGTATTCACATGTCTCTCTCCTCAGACATTTTGCTCCAA
tcctgat putative branch site (score: 8)
ttccttgtttc putative PPT
atttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagattcagattcctctaatcctgatcgtcgatttcttttgttcatcgtggttccttgtttcgatctcagGTGTCGAAGCCTCTTCTAGAGACTTCGAGGAAAGGATACCTCGCGGCTAGCTCCGCATCAGCGTATTCACATGTCTCTCTCCTCAGACATTTTGCTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC