1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaactcgcgatctttccatttccattccacacctctctttagtgtgtttacgtagattcgttgccctttgcagctgacacacgcgtgatcatgatctgcagGGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAAAGGATAGAGAGGAGGAGGGGACCCCTTGAGAAAGTAGAAAAAGCTCGAC
species | Selaginella moellendorffii |
transcript | EFJ10769 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CTGATCGAAGAGCTTGCAGCGGTAACAAAAGGAAATTTTGCGGGAACCAG GGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAAEST: gi|169056724|gb|FE463910.1|FE463910
genomic: CTGATCGAAGAGCTTGCAGCGGTAACAAAAGGAAATTTTGCGGGAACCAGgtaactcgcg ... tgatctgcagGGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAA
EST: CTGATCGAAGAGCTTGCAGCGGTAACAAAAGGAAATTTTGCGGGAACCAG GGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAAEST: gi|169057462|gb|FE465766.1|FE465766
genomic: CTGATCGAAGAGCTTGCAGCGGTAACAAAAGGAAATTTTGCGGGAACCAGgtaactcgcg ... tgatctgcagGGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAA
EST: CTGATCGAAGAGCTTGCAGCGGTAACAAAAGGAAATTTTGCGGGAACCAG GGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAAEST: gi|169109618|gb|FE510052.1|FE510052
genomic: CTGATCGAAGAGCTTGCAGCGGTAACAAAAGGAAATTTTGCGGGAACCAGgtaactcgcg ... tgatctgcagGGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAA
EST: CTGATCGAAGAGCTTGCAGCGGTAACAAAAGGAAATTTTGCGGGAACCAG GGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAAEST: gi|169039664|gb|FE448598.1|FE448598
genomic: CTGATCGAAGAGCTTGCAGCGGTAACAAAAGGAAATTTTGCGGGAACCAGgtaactcgcg ... tgatctgcagGGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAA
EST: CTGATCGAAGAGCTTGCAGCGGTAACAAAAGGAAATTTTGCGGGAACCAG GGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAAEST: gi|169082342|gb|FE489515.1|FE489515
genomic: CTGATCGAAGAGCTTGCAGCGGTAACAAAAGGAAATTTTGCGGGAACCAGgtaactcgcg ... tgatctgcagGGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAA
EST: CTGATCGAAGAGCTTGCAGCGGTAACAAAAGGAAATTTTGCGGGAACCAG GGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAA
genomic: CTGATCGAAGAGCTTGCAGCGGTAACAAAAGGAAATTTTGCGGGAACCAGgtaactcgcg ... tgatctgcagGGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAA
tttacgtagattcgttgccctttgcagctgacacacgcgtgatcatgatctgcagGGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAAAGGATAGAGAGGAGGAGGGGACCCCTTGAGAAAGTAGAAAAAGCTCGAC
agctgac putative branch site (score: 14)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactcgcgatctttccatttccattccacacctctctttagtgtgtttacgtagattcgttgccctttgcagctgacacacgcgtgatcatgatctgcagGGTATGAACTAGCACAACAGTTTTTATCTAAGATTCTTCGTTAAAAGCAAAAGGATAGAGAGGAGGAGGGGACCCCTTGAGAAAGTAGAAAAAGCTCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG