1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagtgtatcatctcttagtttctagtttttaatcgcgttgtttgatggcacagAATGCTCACCGGCAGCAACGGTTTGTTCAAGAAGTTACGATCCAGTATAACTTATGCAATGAGCCCTG
species | Selaginella moellendorffii |
transcript | EFJ10097 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTGCTCCTGCTGCAATGGAGCGGACCATGACTACACGATCGGCATCATCG AATGCTCACCGGCAGCAACGGTTTGTTEST: gi|169114411|gb|FE516297.1|FE516297
genomic: TTGCTCCTGCTGCAATGGAGCGGACCATGACTACACGATCGGCATCATCGgtagtgtatc ... gatggcacagAATGCTCACCGGCAGCAACGGTTTGTT
EST: TTGCTCCTGCTGCAATGGAGCGGACCATGACTACACGATCGGCATCATCG AATGCTCACCGGCAGCAACGGTTTGTTCAAGAAGTTACGATCCAGTATAACEST: gi|169030602|gb|FE437909.1|FE437909
genomic: TTGCTCCTGCTGCAATGGAGCGGACCATGACTACACGATCGGCATCATCGgtagtgtatc ... gatggcacagAATGCTCACCGGCAGCAACGGTTTGTTCAAGAAGTTACGATCCAGTATAAC
EST: TTGCTCCTGCTGCAATGGAGCGGACCATGACTACACGATCGGCATCATCG AATGCTCACCGGCAGCAACGGTTTGTTCAAGAAGTTACGATCCAGTATAACEST: gi|169018870|gb|FE427055.1|FE427055
genomic: TTGCTCCTGCTGCAATGGAGCGGACCATGACTACACGATCGGCATCATCGgtagtgtatc ... gatggcacagAATGCTCACCGGCAGCAACGGTTTGTTCAAGAAGTTACGATCCAGTATAAC
EST: TTGCTCCTGCTGCAATGGAGCGGACCATGACTACACGATCGGCATCATCG AATGCTCACCGGCAGCAACGGTTTGTTCAAGAAGTTACGATCCAGTATAAC
genomic: TTGCTCCTGCTGCAATGGAGCGGACCATGACTACACGATCGGCATCATCGgtagtgtatc ... gatggcacagAATGCTCACCGGCAGCAACGGTTTGTTCAAGAAGTTACGATCCAGTATAAC
gtagtgtatcatctcttagtttctagtttttaatcgcgttgtttgatggcacagAATGCTCACCGGCAGCAACGGTTTGTTCAAGAAGTTACGATCCAGTATAACTTATGCAATGAGCCCTG
tttctagtttttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgtatcatctcttagtttctagtttttaatcgcgttgtttgatggcacagAATGCTCACCGGCAGCAACGGTTTGTTCAAGAAGTTACGATCCAGTATAACTTATGCAATGAGCCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT