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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactattgtttaagttttccttacttgagctggccattcgtctagGAACTTAACAATGAAGAGGCTCTGGAGATGCAAAAGAAATTGGAATCCGATGGCGAGGCACCACTTCACATTTGCAATGCCGACAAGACGTTCACCATCA

Basic information

species Selaginella moellendorffii
transcript EFJ09403
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169106168|gb|FE505685.1|FE505685
EST:     GCTGGAAGCATTACAG                         GAACTTAACAATGAAGAGGCTCTGGAGATGCAAAAGAAATTGGAATCCGAT
genomic: GCTGGAAGCATTACAGgtatactatt ... attcgtctagGAACTTAACAATGAAGAGGCTCTGGAGATGCAAAAGAAATTGGAATCCGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatactattgtttaagttttccttacttgagctggccattcgtctagGAACTTAACAATGAAGAGGCTCTGGAGATGCAAAAGAAATTGGAATCCGATGGCGAGGCACCACTTCACATTTGCAATGCCGACAAGACGTTCACCATCA
                           tccttac  putative branch site (score: 2)
                                              ttcgtct  putative PPT
        tatactattgtttaa  TA-rich tract