1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttcatgaaacagtatctgaaaagaattgagattgatcaacttgtgctgctgtgcagAGCTGCTTCTCTTCCTCGCGAGCCCACTTTGCAAATCCATCCCGCAG
species | Selaginella moellendorffii |
transcript | EFJ09306 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGGAACTATCAAGACGAACCTTGGAAGAGATTTCAACCAGACTTCAGCTA AGCTGCTTCTCTTCCTCGCGAGCCCACTTTGCAAATCCATCCCGCAGEST: gi|169103891|gb|FE508375.1|FE508375
genomic: TGGAACTATCAAGACGAAACTTGGAAGAGATTTCAATCAGACTTCAGCTAgtaagttcat ... tgctgtgcagAGCTGCTTCTCTTCCTCGCGAGCCCACTTTGCAAATCCATCCCGCAG
EST: TGGAACTATCAAGACGAAACTTGGAAGAGATTTCAATCAGACTTCAGCTA AGCTGCTTCTCTTCCTCGCGAGCCCACTTTGCAAATCCATCCCGCAG
genomic: TGGAACTATCAAGACGAAACTTGGAAGAGATTTCAATCAGACTTCAGCTAgtaagttcat ... tgctgtgcagAGCTGCTTCTCTTCCTCGCGAGCCCACTTTGCAAATCCATCCCGCAG
tcatgaaacagtatctgaaaagaattgagattgatcaacttgtgctgctgtgcagAGCTGCTTCTCTTCCTCGCGAGCCCACTTTGCAAATCCATCCCGCAG
gattgat putative branch site (score: 32)
aaaagaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcatgaaacagtatctgaaaagaattgagattgatcaacttgtgctgctgtgcagAGCTGCTTCTCTTCCTCGCGAGCCCACTTTGCAAATCCATCCCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT