1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagcgtacacgaaagtttgttcttcaagcacttagacatgtacaatattcttttcagCCTACAGTAGCGGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAACAAGGAAACTCTCATAGCCGGCGGGCCATATGTTCTACCTCTTGCAAAGAAAC
species | Selaginella moellendorffii |
transcript | EFJ09183 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AGAGGCAGTAGAAGTTGTGACAGGAATCGTTGGCTGTGCTGGCCCTCA-G CCTACAGTAGCGGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAACEST: gi|169034724|gb|FE443432.1|FE443432
genomic: AGAGGCAGTAGAAGTTGTGACAGGAATCGTTGGCTGTGCTGGCC-TCAAGgtaagcgtac ... ttcttttcagCCTACAGTAGCGGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAAC
EST: CAGAGGCAGTAGAAGTTGTGACAGGAATCGTTGGCTGTGCTGGCCTCAAG CCTACAGTAGCGGCAATAGCAGCTEST: gi|169025380|gb|FE435994.1|FE435994
genomic: CAGAGGCAGTAGAAGTTGTGACAGGAATCGTTGGCTGTGCTGGCCTCAAGgtaagcgtac ... ttcttttcagCCTACAGTAGCGGCAATAGCAGCT
EST: CAGAGGCAGTAGAAGTTGTGACAGGAATCGTTGGCTGTGCTGGCCTCAAG CCTACAGTAGCGGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAACAAG
genomic: CAGAGGCAGTAGAAGTTGTGACAGGAATCGTTGGCTGTGCTGGCCTCAAGgtaagcgtac ... ttcttttcagCCTACAGTAGCGGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAACAAG
gcgtacacgaaagtttgttcttcaagcacttagacatgtacaatattcttttcagCCTACAGTAGCGGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAACAAGGAAACTCTCATAGCCGGCGGGCCATATGTTCTACCTCTTGCAAAGAAAC
tattcttttc CT-rich tract
tacaatattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgtacacgaaagtttgttcttcaagcacttagacatgtacaatattcttttcagCCTACAGTAGCGGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAACAAGGAAACTCTCATAGCCGGCGGGCCATATGTTCTACCTCTTGCAAAGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA