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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttagcttttctggcaccttttacttggtaaaaacattgttctatgtagGGGGAAAGTTGCAGAAGGTATTGACTTCGATCGACATTATGGTCGCCTTGTCATAATGTTTGGGGTGCCGTTTCAGTATACACTGAGCAA

Basic information

species Selaginella moellendorffii
transcript EFJ08988
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ08988 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: Vv07s0104g00060.t01 (Vitis vinifera), 3'ss of exon 7
--------------------------------------gtttgttagcttttctggcaccttttacttgg---taaaaacattgttcta------tgtagGGGGAAAGTTGCAGAAGGTATTGACTTCGATCGACATTATGGTCGCCTTGTCATAATGTTTGGGGTGCCGTTTCAGTATACACTGAGCAA
                                      |  ||   |   ||  ||  || |  |  ||    |||||   |  ||||       || ||||||||||| || ||||||||||| || ||||||||||||||  |  | || || |||||||| || || || || || ||| | |||| 
ggggaatcccctgatcccctggtatgaactgcataaagggatgggggtgattgagggtccatcaagatgagattaaaagtttatttctgcactgttgcagGGGGAAAGTAGCTGAAGGTATTGATTTTGATCGACATTATGGAAGATTAGTGATCATGTTTGGTGTTCCTTTCCAATACACATTAAGCAG

upper sequence: EFJ08988 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: PP1S145_26V6.3 (Physcomitrella patens), 3'ss of exon 9
-------------------------------------------------------------------------------gtttgttagcttttctggcaccttttacttggtaaaaacattgtt--ctatgtagGGGGAAAGTTGCAGAAGGTATTGACTTCGATCGACATTATGGTCGCCTTGTCATAATGTTTGGGGTGCCGTTTCAGTATACACTGAGCAA
                                                                               |     | | ||  |||  ||| |  |  |||       |||||   |   | ||||| ||||||||||| |||||||| || || || || |||||||||||||| || |||| ||| || || ||||| || || || |||| 
gtaagttgtttctggatcgtccatctacagtcgtatttgagatttagaggctcaatcctcaactcgtatgagctacatggagacctcgtttcactg--accatcaatgtggctggtg-attgtcgacatggcagGGGCAAAGTTGCAGAGGGTATTGATTTTGACCGGCACTATGGTCGCCTTGTGATTATGTATGGTGTACCATTTCAATACACCCTCAGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgttagcttttctggcaccttttacttggtaaaaacattgttctatgtagGGGGAAAGTTGCAGAAGGTATTGACTTCGATCGACATTATGGTCGCCTTGTCATAATGTTTGGGGTGCCGTTTCAGTATACACTGAGCAA
                                           ttgttct  CT-rich tract
                                  taaaaacatt  TA-rich tract