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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccaaacatctcgtcaagctgtcgtattcgctataattgccgcttcgttgcctgtagGAAGACATTACAGACATGAAAAAGAAGGAGCAAGCAAACGAGAAATTCATGTACGAGATTGCGCAGGAAAACAAGCATTCAATGGAGCCCCTGACGAAGG

Basic information

species Selaginella moellendorffii
transcript EFJ08639
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ08639 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: PP1S229_47V6.2 (Physcomitrella patens), 3'ss of exon 6
---------------------------------------------------------------------------------gtgccaaacatctcgtcaagctgtcgtattcgctataattgccgcttcgttgcctgtagGAAGACATTACAGACATGAAAAAGAAGGAGCAAGCAAACGAGAAATTCATGTACGAGATTGCGCAGGAAAACAAGCATTCAATGGAGCCCCTGACGAAGG
                                                                                 |||   ||   |    |||  |    | |   |   |   |  |||  |    ||| |||||||| |  | |||||||| |||||||||   ||||| |||||||| ||||| ||||||||||| |  |||||  |    |  ||||| |||||||| |
gtatgacaatgtgtgccatgatccttcaagctgcgtcttgcaccagttacctataatgtccaagtgttccttgaaacaggagtgtttaattacatcacaacttcaaatttcttcccaatcagttgctgtgagtactgcagGAAGACGTAGCGGACATGAAGAAGAAGGAGGCCGCAAATGAGAAATTAATGTATGAGATTGCGCAAGGGAACAAAAAGCTTACCGAGCCTCTGACGAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaacatctcgtcaagctgtcgtattcgctataattgccgcttcgttgcctgtagGAAGACATTACAGACATGAAAAAGAAGGAGCAAGCAAACGAGAAATTCATGTACGAGATTGCGCAGGAAAACAAGCATTCAATGGAGCCCCTGACGAAGG
                                        cttcgtt  CT-rich tract
                             tataatt  TA-rich tract