1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtactttgcggagcttttcttcttggaaggcatggttttcttatactgtgttcttaaagGTGTCTATGGAGGGCCGGCCTCACGAGAAGATCGTGTGCTCCAGCATCGACTTTTGCTGGCAATCTGTGCAAGAGAAAGTCAACTCCAGGATCAAACAAC
species | Selaginella moellendorffii |
transcript | EFJ08267 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTATATGTCCGAGATCTTGGATTGTGCAGACGGGAAGCCATTGTTTAAG GTGTCTATGGAGGGCCGGCCTCACGAGAAGATCGTGTGCTCCAGCATCGACEST: gi|169110566|gb|FE509283.1|FE509283
genomic: ACTATATATCCGAGATCTTGGATTGTGTAGACGGGAAGCCATTGTTTAAGgtactttgcg ... gttcttaaagGTGTCTATGGAGGGCCGGCCTCACGAGAAGATCGTGTGCTCCAGCATCGAC
EST: ACTATATATCCGAGATCTTGGATTGTGTAGACGGGAAGCCATTGTTTAAG GTGTCTATGGAGGGCCGGCCTCACGAGAAGATCGTGTGCTCCAGCATCGACEST: gi|169108201|gb|FE512574.1|FE512574
genomic: ACTATATATCCGAGATCTTGGATTGTGTAGACGGGAAGCCATTGTTTAAGgtactttgcg ... gttcttaaagGTGTCTATGGAGGGCCGGCCTCACGAGAAGATCGTGTGCTCCAGCATCGAC
EST: ACTATATGTCCGAGATCTTGGATTGTGCAGACGGGAAGCCATTGTTTAAG GTGTCTATGGAGGGCCGGCCTCACGAGAAGATCGTGTGCTCCAGCATCGACEST: gi|169095835|gb|FE499722.1|FE499722
genomic: ACTATATATCCGAGATCTTGGATTGTGTAGACGGGAAGCCATTGTTTAAGgtactttgcg ... gttcttaaagGTGTCTATGGAGGGCCGGCCTCACGAGAAGATCGTGTGCTCCAGCATCGAC
EST: ACTATATATCCGAGATCTTGGATTGTGTAGACGGGAAGCCATTGTTTAAG GTGTCTATGGAGGGCCGGCCTCACGAGAAGATCGTGTGCTCCAGCATCGACEST: gi|169110567|gb|FE509284.1|FE509284
genomic: ACTATATATCCGAGATCTTGGATTGTGTAGACGGGAAGCCATTGTTTAAGgtactttgcg ... gttcttaaagGTGTCTATGGAGGGCCGGCCTCACGAGAAGATCGTGTGCTCCAGCATCGAC
EST: ACTATATATCCGAGATCTTGGATTGTGTAGACGGGAAGCCATTGTTTAAG GTGTCTATGGAGGGCCGGCCTCACGAGAAGATCGTGTGCTCCAGCATCGAC
genomic: ACTATATATCCGAGATCTTGGATTGTGTAGACGGGAAGCCATTGTTTAAGgtactttgcg ... gttcttaaagGTGTCTATGGAGGGCCGGCCTCACGAGAAGATCGTGTGCTCCAGCATCGAC
tttgcggagcttttcttcttggaaggcatggttttcttatactgtgttcttaaagGTGTCTATGGAGGGCCGGCCTCACGAGAAGATCGTGTGCTCCAGCATCGACTTTTGCTGGCAATCTGTGCAAGAGAAAGTCAACTCCAGGATCAAACAAC
tgttctt CT-rich tract
ttttcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactttgcggagcttttcttcttggaaggcatggttttcttatactgtgttcttaaagGTGTCTATGGAGGGCCGGCCTCACGAGAAGATCGTGTGCTCCAGCATCGACTTTTGCTGGCAATCTGTGCAAGAGAAAGTCAACTCCAGGATCAAACAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA