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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatttatcaagtaagctcaatctgagatctgggcctgtttataattcagGTCCGATCCGAGTAGACTTGGAGATACTCTGGGAACCGAAAACGAGGAATCTTGTACAACTTACAACATGCTCAAG

Basic information

species Selaginella moellendorffii
transcript EFJ08149
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ08149 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: LOC_Os02g10190.1 (Oryza sativa), 3'ss of exon 6
----------------------gtaaggatttatcaagtaagctcaatctgagatctgg------gcctgtttataa---ttcagGTCCGATCCGAGTAGACTTGGAGATACTCTGGGAACCGAAAACGAGGAATCTTGTACAACTTACAACATGCTCAAG
                       |    | | |  |    |  ||  | |||  | ||        | | | |||||   |||||| || |||| |   |  | |  ||||||||| | || || || ||||||||||| ||||| |||||||||||||||
gtaattttactctagattctgaattcatagtcaatagtatatttctctttgatgtatgactatctacttctatataattattcagGACCAATCCAAAGCGTTTAGCTGATACTCTGAGTACTGAGAATGAGGAATCTTGCACAACCTACAACATGCTCAAG

upper sequence: EFJ08149 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: AT5G12950.1 (Arabidopsis thaliana), 3'ss of exon 6
---------------------------------------gtaaggatttatcaagtaagctcaatctgagatctgggcctgtttataattcagGTCCGATCCGAGTAGACTTGGAGATACTCTGGGAACCGAAAACGAGGAATCTTGTACAACTTACAACATGCTCAAG
                                         | |  ||| |    |||| || | |   ||| ||||  || | |||  | |||   ||||| |  ||| | |    | | |||  ||| |||||||||||||| ||||| ||||| ||||||||||||
gtactaccattacctgactttagtctttggttcattgtaacatgactttttgttttaagttctaaccatgatttgggaatggtaata--ttagGCAAGATCCCAAGAGAATGGCGACTGCACTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAG

upper sequence: EFJ08149 (Selaginella moellendorffii), 3'ss of exon 6
lower sequence: AT5G12960.1 (Arabidopsis thaliana), 3'ss of exon 6
---------------------------------------gtaaggatttatcaagtaagctcaatctgagatctgggcctgtttataattcagGTCCGATCCGAGTAGACTTGGAGATACTCTGGGAACCGAAAACGAGGAATCTTGTACAACTTACAACATGCTCAAG
                                         | |  ||| |    ||||    | |   ||| ||||  | ||||  ||| |||   ||||| |  ||| | |    |||  ||  ||| |||||||||||||| ||||| ||||| ||||||||||||
gtactaccattacttgactttagagtttggttctttgtaacatgactttttgttttaagtcttaaccatgatttgggaatatttaacatt-agGCAAGATCCAAAGAGAATGGCGACTACGTTGCAAACTGAAAACGAGGAATCATGTACTACTTATAACATGCTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169021205|gb|FE429566.1|FE429566
EST:     AGCTCCTCCCATACATATGCTACAGGGGGGACGTCTGCCGGCGAATTCTG                         GTCCGATCCGAGTAGACTTGGAGATACTCTGGGAACCGAAAACGAGGAATC
genomic: AGCTCCTCCCATACATATGCTACAGGGGGGACGTCTGCCGGCGAATTCTGgtaaggattt ... tataattcagGTCCGATCCGAGTAGACTTGGAGATACTCTGGGAACCGAAAACGAGGAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaggatttatcaagtaagctcaatctgagatctgggcctgtttataattcagGTCCGATCCGAGTAGACTTGGAGATACTCTGGGAACCGAAAACGAGGAATCTTGTACAACTTACAACATGCTCAAG
                                       cctgttt  CT-rich tract
                                         tgtttataatt  TA-rich tract