Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaactttcagatttgttcatccatggtttcttaatttcctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACCAATCTCAATGCATTGGTCAAGGTTCTTCCAGGACTTATCGGCGGCAGTG

Basic information

species Selaginella moellendorffii
transcript EFJ07729
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169113502|gb|FE515037.1|FE515037
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169065822|gb|FE476232.1|FE476232
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169076855|gb|FE484754.1|FE484754
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169083698|gb|FE494872.1|FE494872
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169028918|gb|FE438604.1|FE438604
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169081273|gb|FE488756.1|FE488756
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169098253|gb|FE499908.1|FE499908
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169108568|gb|FE510783.1|FE510783
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169025972|gb|FE434441.1|FE434441
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169029029|gb|FE437532.1|FE437532
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169081523|gb|FE490241.1|FE490241
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169040813|gb|FE447864.1|FE447864
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169065061|gb|FE474509.1|FE474509
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169103788|gb|FE506153.1|FE506153
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169045804|gb|FE453896.1|FE453896
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169104989|gb|FE506598.1|FE506598
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169065649|gb|FE475890.1|FE475890
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169094524|gb|FE492422.1|FE492422
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169067032|gb|FE475996.1|FE475996
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169044178|gb|FE452180.1|FE452180
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169046767|gb|FE455847.1|FE455847
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169034884|gb|FE444069.1|FE444069
EST:     CAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: CAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169020443|gb|FE431690.1|FE431690
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169044587|gb|FE450626.1|FE450626
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169026511|gb|FE434785.1|FE434785
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169112476|gb|FE512753.1|FE512753
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169019094|gb|FE427903.1|FE427903
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169055062|gb|FE462964.1|FE462964
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169077753|gb|FE485431.1|FE485431
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169023097|gb|FE431619.1|FE431619
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169102485|gb|FE508542.1|FE508542
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169032868|gb|FE437817.1|FE437817
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169108850|gb|FE509167.1|FE509167
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169108428|gb|FE511995.1|FE511995
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169020097|gb|FE428510.1|FE428510
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169068642|gb|FE479726.1|FE479726
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169082122|gb|FE490582.1|FE490582
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169063776|gb|FE472506.1|FE472506
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169115636|gb|FE517846.1|FE517846
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169080870|gb|FE486702.1|FE486702
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169041286|gb|FE446842.1|FE446842
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169104123|gb|FE507112.1|FE507112
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169057562|gb|FE464514.1|FE464514
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169071470|gb|FE479083.1|FE479083
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169067265|gb|FE473876.1|FE473876
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169027549|gb|FE433756.1|FE433756
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169114836|gb|FE516097.1|FE516097
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169075985|gb|FE480993.1|FE480993
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169078188|gb|FE487296.1|FE487296
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169055417|gb|FE463774.1|FE463774
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169098559|gb|FE497211.1|FE497211
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169026276|gb|FE432639.1|FE432639
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169050854|gb|FE459376.1|FE459376
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169073789|gb|FE484010.1|FE484010
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169114816|gb|FE516077.1|FE516077
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169075982|gb|FE480990.1|FE480990
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169083450|gb|FE495342.1|FE495342
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169079172|gb|FE488657.1|FE488657
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169042496|gb|FE450977.1|FE450977
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169026428|gb|FE434741.1|FE434741
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169067769|gb|FE473366.1|FE473366
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169063622|gb|FE471728.1|FE471728
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169043722|gb|FE453466.1|FE453466
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169024172|gb|FE432511.1|FE432511
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169088444|gb|FE495490.1|FE495490
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169097083|gb|FE497616.1|FE497616
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169049426|gb|FE458285.1|FE458285
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169101894|gb|FE507743.1|FE507743
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169081962|gb|FE487471.1|FE487471
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169022715|gb|FE428403.1|FE428403
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169075568|gb|FE482578.1|FE482578
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169045329|gb|FE453642.1|FE453642
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169083272|gb|FE494787.1|FE494787
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169018603|gb|FE427516.1|FE427516
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169062231|gb|FE469212.1|FE469212
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCCGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
EST: gi|169019106|gb|FE426771.1|FE426771
EST:     AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCG                         GTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC
genomic: AACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 111

CAGCTTGGCTGCTTATGAAAAGAAGTATCCAACAGAAGCTGCGGAGTTCAAACAGCTCATTAGTGGGGAGCTTCCAGACGGCTGGGACAAAGCTCTGCCGgtaaaacttt ... ctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACCAATCTCAATGCATTGGTCAAGGTTCTTCCAGGACTTATCGGCGGCAGTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaaaactttcagatttgttcatccatggtttcttaatttcctgttctcagGTCTACACTCCTGAAAGCCCCGGTGACGCCACCAGGAACCTTTCACAAACCAATCTCAATGCATTGGTCAAGGTTCTTCCAGGACTTATCGGCGGCAGTG
                                   tcttaat  putative branch site (score: 111)
                                 tttcttaatttcct  CT-rich tract
                                 tttcttaattt  TA-rich tract