1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagcgtacacgaaagtttgttcttcaagcacttagacatgtacaataatattctttgcagCCTACAGTAGCAGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAACAAGGAAACTCTCATAGCCGGCGGTCCATATGTTCTACCTCTTGCAAAGAAAC
species | Selaginella moellendorffii |
transcript | EFJ07179 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CAGAGGCAGTAGAAGTTGTGACAGGAATCGTTGGCTGTGCTGGCCTCAAG CCTACAGTAGCGGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAACAAGEST: gi|169106995|gb|FE505966.1|FE505966
genomic: CAGAGGCAGTAGAAGTTGTGACTGGAATCGTTGGTTGTGCTGGCCTCAAGgtaagcgtac ... ttctttgcagCCTACAGTAGCAGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAACAAG
EST: AGAGGCAGTAGAAGTTGTGACTGGAATCGTTGGTTGTGCTGGCCCTCA-G CCTACAGTAGCAGCAATAGCAGCTGGAAAGGATATTGCTCTAGCEST: gi|169068927|gb|FE477268.1|FE477268
genomic: AGAGGCAGTAGAAGTTGTGACTGGAATCGTTGGTTGTGCTGGCC-TCAAGgtaagcgtac ... ttctttgcagCCTACAGTAGCAGCAATAGCAGCTGGAAAGGATATTGCTCTAGC
EST: AGAGGCAGTAGAAGTTGTGACTGGAATCGTTGGTTGTGCTGNGCCTCA-G CCTACAGTAGCAGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAACAA
genomic: AGAGGCAGTAGAAGTTGTGACTGGAATCGTTGGTTGTGCTG-GCCTCAAGgtaagcgtac ... ttctttgcagCCTACAGTAGCAGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAACAA
tacacgaaagtttgttcttcaagcacttagacatgtacaataatattctttgcagCCTACAGTAGCAGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAACAAGGAAACTCTCATAGCCGGCGGTCCATATGTTCTACCTCTTGCAAAGAAAC
tattcttt CT-rich tract
tacaataatattcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgtacacgaaagtttgttcttcaagcacttagacatgtacaataatattctttgcagCCTACAGTAGCAGCAATAGCAGCTGGAAAGGATATTGCTCTAGCCAACAAGGAAACTCTCATAGCCGGCGGTCCATATGTTCTACCTCTTGCAAAGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA