1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gttagtactcttcctctcccgcataattgcaaactttaagaaaatgttcttaccatttgcagGTCCGATCGTCGTACCGAGCCGGAGAGTTCTTCTTGGAGAGCATGATTCGCAGCTCTCGTGAAGGATCAAAGAAGTAG
species | Selaginella moellendorffii |
transcript | EFJ06444 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATACGGGGAGTCAGTCGTCGGGTTTCGATACGTCGCAAGTGGTCCACTG GTCCGATCGTCGTACCGAGCCGGAGAGTTCTTCTTGGAGAGCATGATTCGC
genomic: AATACGGGGAGTCAGTCGTCGGGTTTCGATACGTCGCAAGTGGTCCACTGgttagtactc ... ccatttgcagGTCCGATCGTCGTACCGAGCCGGAGAGTTCTTCTTGGAGAGCATGATTCGC
ctcttcctctcccgcataattgcaaactttaagaaaatgttcttaccatttgcagGTCCGATCGTCGTACCGAGCCGGAGAGTTCTTCTTGGAGAGCATGATTCGCAGCTCTCGTGAAGGATCAAAGAAGTAG
ttcttac putative branch site (score: 19)
ttcttacc CT-rich tract
aaactttaagaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtactcttcctctcccgcataattgcaaactttaagaaaatgttcttaccatttgcagGTCCGATCGTCGTACCGAGCCGGAGAGTTCTTCTTGGAGAGCATGATTCGCAGCTCTCGTGAAGGATCAAAGAAGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT