1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaggagctcccaagtttcataaactctagttttacagcttgatactttcagTGCGATCCATACTTTGATGGAAAAGGATGCAAGCATCCTGGTTGCGAACCTGAGTATGACACGCCGGTTTGCGTGAAGCAATGCGTGGACAATGAGCAGT
species | Selaginella moellendorffii |
transcript | EFJ05715 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATATGCGGCTTGGGAATACTTTGCACAAACAGGGGTGGTGACGTCTCAA TGCGATCCATATTTTGATGGAAAAGGATGCAAGCATCCTGGTTGCGAACCTEST: gi|169053819|gb|FE463406.1|FE463406
genomic: CATATGCGGCTTGGGAATACTTTGCACAAACAGGGGTGGTGACGTCTCAAgtaaggagct ... atactttcagTGCGATCCATACTTTGATGGAAAAGGATGCAAGCATCCTGGTTGCGAACCT
EST: CATATGCGGCTTGGGAATACTTTGCACAAACAGGGGTGGTGACGTCTCAA TGCGATCCATATTTTGATGGAAAAGGATGCAAGCATCCTGGTTGCGAACCTEST: gi|169053818|gb|FE463405.1|FE463405
genomic: CATATGCGGCTTGGGAATACTTTGCACAAACAGGGGTGGTGACGTCTCAAgtaaggagct ... atactttcagTGCGATCCATACTTTGATGGAAAAGGATGCAAGCATCCTGGTTGCGAACCT
EST: CATATGCGGCTTGGGAATACTTTGCACAAACAGGGGTGGTGACGTCTCAA TGCGATCCATATTTTGATGGAAAAGGATGCAAGCATCCTGGTTGCGAACCTEST: gi|169102210|gb|FE505797.1|FE505797
genomic: CATATGCGGCTTGGGAATACTTTGCACAAACAGGGGTGGTGACGTCTCAAgtaaggagct ... atactttcagTGCGATCCATACTTTGATGGAAAAGGATGCAAGCATCCTGGTTGCGAACCT
EST: CATATGCGGCTTGGGAATACTTTGCACAAACAGGGGTGGTGACGTCTCAA TGCGATCCATATTTTGATGGAAAAGGATGCAAGCATCCTGGTTGCGAACCT
genomic: CATATGCGGCTTGGGAATACTTTGCACAAACAGGGGTGGTGACGTCTCAAgtaaggagct ... atactttcagTGCGATCCATACTTTGATGGAAAAGGATGCAAGCATCCTGGTTGCGAACCT
gtaaggagctcccaagtttcataaactctagttttacagcttgatactttcagTGCGATCCATACTTTGATGGAAAAGGATGCAAGCATCCTGGTTGCGAACCTGAGTATGACACGCCGGTTTGCGTGAAGCAATGCGTGGACAATGAGCAGT
gcttgat putative branch site (score: 77)
tactttc CT-rich tract
tttcataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggagctcccaagtttcataaactctagttttacagcttgatactttcagTGCGATCCATACTTTGATGGAAAAGGATGCAAGCATCCTGGTTGCGAACCTGAGTATGACACGCCGGTTTGCGTGAAGCAATGCGTGGACAATGAGCAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG