1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatgtttggattgatttctctgaatgtaacaagtctgttttcctttgcagGGATTCGCTAGTGGTAGTCTCGACGACGATGCGAGCTCCGTGCGGAAGTTTGCCAGTCGTGGTTTTGAGATGTTCGTTGCACAGTCCTACAGCAAGAACC
species | Selaginella moellendorffii |
transcript | EFJ05582 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ATGAGCTTGAGGAGAAAGGCCACATGCCNNNNNNNGATGTTGCATATCAG GGATTCGCTAGTGGTAGTCTCGACGACGATGCGAGCTCCGTGCGGAAGTTTEST: gi|169112642|gb|FE509415.1|FE509415
genomic: ATGAGCTTGAGGAGAAAGGCCACATGCCTTTTTTTGATGTTGCATATCAGgtaatgtttg ... tcctttgcagGGATTCGCTAGTGGTAGTCTCGACGACGATGCGAGCTCCGTGCGGAAGTTT
EST: ATGAGCTTGAGGAGAAAGGCCACATGCCNNNNNNNGATGTTGCATATCAG GGATTCGCTAGTGGTAGTCTCGACGACGATGCGAGCTCCGTGCGGAAGTTTEST: gi|169049386|gb|FE459818.1|FE459818
genomic: ATGAGCTTGAGGAGAAAGGCCACATGCCTTTTTTTGATGTTGCATATCAGgtaatgtttg ... tcctttgcagGGATTCGCTAGTGGTAGTCTCGACGACGATGCGAGCTCCGTGCGGAAGTTT
EST: GTTGCATATCAG GGATTCGCTAGTGGTAGTCTCGACGACGATGCGAGCTCCGTGCGGAAGTTT
genomic: GTTGCATATCAGgtaatgtttg ... tcctttgcagGGATTCGCTAGTGGTAGTCTCGACGACGATGCGAGCTCCGTGCGGAAGTTT
gtaatgtttggattgatttctctgaatgtaacaagtctgttttcctttgcagGGATTCGCTAGTGGTAGTCTCGACGACGATGCGAGCTCCGTGCGGAAGTTTGCCAGTCGTGGTTTTGAGATGTTCGTTGCACAGTCCTACAGCAAGAACC
atgtaac putative branch site (score: 17)
tctgttttcctttgc putative PPT
attgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtttggattgatttctctgaatgtaacaagtctgttttcctttgcagGGATTCGCTAGTGGTAGTCTCGACGACGATGCGAGCTCCGTGCGGAAGTTTGCCAGTCGTGGTTTTGAGATGTTCGTTGCACAGTCCTACAGCAAGAACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC