1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagaacttcacaaacttataaagtttaatgctttgttcttctcttagCTCGTGTTTTCTACTGGATCGGGCGTGAATGGGTTTACTCTCGATCCATCCCTGGGAGAATTTATATTGACACATCCTGACATTAAG
species | Selaginella moellendorffii |
transcript | EFJ04554 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAGTGAAATGGTCGCGGCTGGGTATTGCATGTACGGTAGCTCATGCACG CTCGTGTTNTCTACTGGATCGGGCGTGAATGGGTTTACTCTCGATEST: gi|169060723|gb|FE469749.1|FE469749
genomic: GGAGTGAAATGGTCGCGGCTGGGTATTGCATGTACGGTAGCTCATGCACGgtaagaactt ... cttctcttagCTCGTGTTTTCTACTGGATCGGGCGTGAATGGGTTTACTCTCGAT
EST: GGAGTGAAATGGTCGCGGCTGGGTATTGCATGTACGGTAGCTCATGCACG CTCGTGTTTTCTACTGGATCGGGCGTGAATGGGTTTACTCTCGATCCATCCEST: gi|169038024|gb|FE443632.1|FE443632
genomic: GGAGTGAAATGGTCGCGGCTGGGTATTGCATGTACGGTAGCTCATGCACGgtaagaactt ... cttctcttagCTCGTGTTTTCTACTGGATCGGGCGTGAATGGGTTTACTCTCGATCCATCC
EST: GGAGTGAAATGGTCGCGGCTGGGTATTGCATGTACGGTAGCTCATGCACG CTCGTGTTTTCTACTGGATCGGGCGTGAATGGGTTTACTCTCGATCCATCC
genomic: GGAGTGAAATGGTCGCGGCTGGGTATTGCATGTACGGTAGCTCATGCACGgtaagaactt ... cttctcttagCTCGTGTTTTCTACTGGATCGGGCGTGAATGGGTTTACTCTCGATCCATCC
gtaagaacttcacaaacttataaagtttaatgctttgttcttctcttagCTCGTGTTTTCTACTGGATCGGGCGTGAATGGGTTTACTCTCGATCCATCCCTGGGAGAATTTATATTGACACATCCTGACATTAAG
gtttaat putative branch site (score: 5)
tgctttgttcttctct CT-rich tract
aaacttataaagttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaacttcacaaacttataaagtttaatgctttgttcttctcttagCTCGTGTTTTCTACTGGATCGGGCGTGAATGGGTTTACTCTCGATCCATCCCTGGGAGAATTTATATTGACACATCCTGACATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA