1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagtttgagagcatcccagtgattttatttccatcctggcttttgtagGGGACATCTCACCTCCTCCCGGCATAAAAGCGGCAATGGAAATGCAAGCCGAGGCCGAGCGTAGGAAGAGGGCGCAAATTCTGGAGTCTGAAG
species | Selaginella moellendorffii |
transcript | EFJ38753 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTACGAGATCA GGGACATCTCACCTCCTCCCGGCATAAAAGCGGCAATGGAAATGCAAGCCGEST: gi|169066977|gb|FE475967.1|FE475967
genomic: CAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTACGAGATCAgtgagtttga ... gcttttgtagGGGACATCTCACCTCCTCCCGGCATAAAAGCGGCAATGGAAATGCAAGCCG
EST: CAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTACGAGATCA GGGACATCTCACCTCCTCCCGGCATAAAAGCGGCAATGGAAATGCAAGCCGEST: gi|169098029|gb|FE496863.1|FE496863
genomic: CAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTACGAGATCAgtgagtttga ... gcttttgtagGGGACATCTCACCTCCTCCCGGCATAAAAGCGGCAATGGAAATGCAAGCCG
EST: CAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTACGAGATCA GGGACATCTCACCTCCTCCCGGCATAAAAGCGGCAATGGAAATGCAAGCCG
genomic: CAATCTCGCTGCTAACGACTGGGGCCTGGAGTGTCTTCGCTACGAGATCAgtgagtttga ... gcttttgtagGGGACATCTCACCTCCTCCCGGCATAAAAGCGGCAATGGAAATGCAAGCCG
gtgagtttgagagcatcccagtgattttatttccatcctggcttttgtagGGGACATCTCACCTCCTCCCGGCATAAAAGCGGCAATGGAAATGCAAGCCGAGGCCGAGCGTAGGAAGAGGGCGCAAATTCTGGAGTCTGAAG
cttttgt CT-rich tract
tgattttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttgagagcatcccagtgattttatttccatcctggcttttgtagGGGACATCTCACCTCCTCCCGGCATAAAAGCGGCAATGGAAATGCAAGCCGAGGCCGAGCGTAGGAAGAGGGCGCAAATTCTGGAGTCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG