1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagagtagtatttgtttaagtcgagcgcttataggaggctttatgaaaacagGACAAATGCAATGGCTTTGCGTGCAAAGTACAAGGACGAGTTTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAG
species | Selaginella moellendorffii |
transcript | EFJ38519 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTTGCTCACGACTTTCAACGAAGTTGATAT GACAAATGCAATGGCTTTGCGTGCAAAGTACAAGGACGAGTTTCAAGAAAAEST: gi|169031261|gb|FE441129.1|FE441129
genomic: CGTTGCTCACGACTTTCAACGAAGTTGACATgtaagagtag ... atgaaaacagGACAAATGCAATGGCTTTGCGTGCAAAGTACAAGGACGAGTTTCAAGAAAA
EST: GATGCTCAAAACACCTTGGCGTTGCTCACGACTTTCAACGAAGTTGACAT GACAAATGCAATGGCTTTGCGTGCAAAGTACAAGGACGAGTTTCAAGAAAAEST: gi|169070985|gb|FE478923.1|FE478923
genomic: GATGCTCAAAACACCTTGGCGTTGCTCACGACTTTCAACGAAGTTGACATgtaagagtag ... atgaaaacagGACAAATGCAATGGCTTTGCGTGCAAAGTACAAGGACGAGTTTCAAGAAAA
EST: GATGCTCAAAACACCTTGGCGTTGCTCACGACTTTCAACGAAGTTGATAT GACAAATGCAATGGCTTTGCGTGCAAAGTACAAGGACGAGTTTCAAGAAAAEST: gi|169070986|gb|FE478924.1|FE478924
genomic: GATGCTCAAAACACCTTGGCGTTGCTCACGACTTTCAACGAAGTTGACATgtaagagtag ... atgaaaacagGACAAATGCAATGGCTTTGCGTGCAAAGTACAAGGACGAGTTTCAAGAAAA
EST: GATGCTCAAAACACCTTGGCGTTGCTCACGACTTTCAACGAAGTTGATAT GACAAATGCAATGGCTTTGCGTGCAAAGTACAAGGACGAGTTTCAAGAAAA
genomic: GATGCTCAAAACACCTTGGCGTTGCTCACGACTTTCAACGAAGTTGACATgtaagagtag ... atgaaaacagGACAAATGCAATGGCTTTGCGTGCAAAGTACAAGGACGAGTTTCAAGAAAA
gtaagagtagtatttgtttaagtcgagcgcttataggaggctttatgaaaacagGACAAATGCAATGGCTTTGCGTGCAAAGTACAAGGACGAGTTTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAG
tagtatttgtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagtagtatttgtttaagtcgagcgcttataggaggctttatgaaaacagGACAAATGCAATGGCTTTGCGTGCAAAGTACAAGGACGAGTTTCAAGAAAAACATGGAGCAAAGCTTGGGTTCATGTCGGTGTTTGTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG