1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagagtcctctctctctctttccttctttctttctcttttattccatgttggacctgatcttcactaggtgagcagTGGCTGTGCAACGCCGATAAGTCGTGCAATGATCCGCGGAAGAGGCTGAA
species | Selaginella moellendorffii |
transcript | EFJ38158 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GACTACGGCCAGGAGTGTTTGATGGAGCGATCAGCATTTCTGCTGTCCAG GEST: gi|169067214|gb|FE474982.1|FE474982
genomic: GACTACGGCCAGGAGTGTTTGATGGAGCGATCAGCATTTCTGCTGTCCAGgtagagtcct ... aggtgagcag-
EST: GACTACGGCCAGGAGTGTTTGATGGAGCGATCAGCATTTCTGCTGTCCAG GEST: gi|169067215|gb|FE474983.1|FE474983
genomic: GACTACGGCCAGGAGTGTTTGATGGAGCGATCAGCATTTCTGCTGTCCAGgtagagtcct ... aggtgagcag-
EST: GACTACGGCCAGGAGTGTTTGATGGAGCGATCAGCATTTCTGCTGTCCAG GEST: gi|169067215|gb|FE474983.1|FE474983
genomic: GACTACGGCCAGGAGTGTTTGATGGAGCGATCAGCATTTCTGCTGTCCAGgtagagtcct ... aggtgagcag-
EST: GACTACGGCCAGGAGTGTTTGATGGAGCGATCAGCATTTCTGCTGTCCAG G
genomic: GACTACGGCCAGGAGTGTTTGATGGAGCGATCAGCATTTCTGCTGTCCAGgtagagtcct ... aggtgagcag-
ccttctttctttctcttttattccatgttggacctgatcttcactaggtgagcagTGGCTGTGCAACGCCGATAAGTCGTGCAATGATCCGCGGAAGAGGCTGAA
acctgat putative branch site (score: 5)
tcttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagagtcctctctctctctttccttctttctttctcttttattccatgttggacctgatcttcactaggtgagcagTGGCTGTGCAACGCCGATAAGTCGTGCAATGATCCGCGGAAGAGGCTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG