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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgggtttcatgtttttatcttgcatccaaaacacacacccaagcataactcttgtttgtgacagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCCCAGGAGGTCCA

Basic information

species Selaginella moellendorffii
transcript EFJ37925
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ37925 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G030784_T01 (Zea mays), 3'ss of exon 5
--------------------gtttgggttt--catgtttttatcttgcatccaaaacacacacccaagc---ataactc------ttgtttgtg--acagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCCCAGGAGGTCCA
                     ||||| |||  || |||   |  ||  |  | | |   | |  || ||   ||   ||       |||||||   ||||| ||| ||||||||||||  || || ||  | || || || ||||| ||||| |||||||| || |||||||||||||| || ||||| |||||      
gctggttttttagtgccctgctttggatttaccaagttgaaaaatttgacgccatatgaaaattcaggctgaatggatcaaatggctgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA-----

upper sequence: EFJ37925 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G435244_T01 (Zea mays), 3'ss of exon 4
--------------------gtttgggttt--catgtttttatcttgcatccaaaacacacacccaagc---ataactct------tgtttgtg--acagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCCCAGGAGGTCCA
                     ||||| |||  || |||   |  ||  |  | | |   | |  || ||   ||   ||       |||||||   ||||| ||| ||||||||||||  || || ||  | || || || ||||| ||||| |||||||| || |||||||||||||| || ||||| |||||      
tgctggtttttagtgccctgctttggatttaccaagttaaaaaatttgactccatatgaaaattcaggctgaatggatcaaatggatgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA-----

upper sequence: EFJ37925 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GRMZM2G370275_T01 (Zea mays), 3'ss of exon 4
--------------------gtttgggttt--catgtttttatcttgcatccaaaacacacacccaagc---ataactc------ttgtttgtg--acagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCCCAGGAGGTCCA
                     ||||| |||  || |||   |  ||  |  | | |   | |  || ||   ||   ||       |||||||   ||||| ||| ||||||||||||  || || ||  | || || || ||||| ||||| |||||||| || |||||||||||||| || ||||| |||||      
tgctggtttttagtgccctgctttggatttaccaagttaaaaaatttgacgccatatgaaaattcaggctgaatggatcaaatggctgtttgttttacagAGAAGATCAAGGACTGGAGCAACGTAGTTGTTGCCTATGAACCAGTTTGGGCTATTGGAACTGGTAAAGTTGCCACCCCAGCTCAGGCTCAGGAA-----

upper sequence: EFJ37925 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA15G04290.2 (Glycine max), 3'ss of exon 5
---------------------------------------------------------------------------------------------------------------------------------gtttgggtttcatgtttttatcttgcatccaaaacacacacccaagcataactc--ttgtttgtgacagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCCCAGGAGGTCCA
                                                                                                                                  |     | ||||   ||  | ||   |    ||   | |     ||  | ||   |||| | || |||  ||  |     | ||| | ||||| ||  | || ||||||||||| ||||| |||||||||||||| ||||| || ||||| ||||| || |||||   
gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgctattttgttagcaatctatattttcgctgaccttaattgtatttg-cagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAGGTATG

upper sequence: EFJ37925 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA15G04290.1 (Glycine max), 3'ss of exon 5
---------------------------------------------------------------------------------------------------------------------------------gtttgggtttcatgtttttatcttgcatccaaaacacacacccaagcataactc--ttgtttgtgacagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCCCAGGAGGTCCA
                                                                                                                                  |     | ||||   ||  | ||   |    ||   | |     ||  | ||   |||| | || |||  ||  |     | ||| | ||||| ||  | || ||||||||||| ||||| |||||||||||||| ||||| || ||||| ||||| || |||     
gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgctattttgttagcaatctatattttcgctgaccttaattgtatttg-cagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAG-----

upper sequence: EFJ37925 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: GLYMA13G41120.1 (Glycine max), 3'ss of exon 5
--------------------------------gtttgggtttcatgtttttatcttgcatccaaaacacacacccaagcataactcttgtttgtg-acagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCCCAGGAGGTCCA
                                 ||    | ||||   ||  | ||   |    ||   | |     ||  | ||   || | |   |||  ||  |     | ||| | ||||| ||  | || || |||||||| ||||| |||||||||||||| ||||| || ||||| ||||| || |||     
gttaaaaaaaactgttctaattgctttaacagattatcatctcatcacttgctattttgttagcaatctatattttcgctgaccttaagtgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAG-----


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttttatcttgcatccaaaacacacacccaagcataactcttgtttgtgacagACAAGGTCAAGGACTGGAAGAATGTGGTGATAGCATACGAGCCAGTGTGGGCGATTGGAACAGGAAAAGTTGCCACCCCTGCGCAGGCCCAGGAGGTCCA
                                 gcataac  putative branch site (score: 3)
                                       ctcttgttt  CT-rich tract
     ttatctt  TA-rich tract