1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaacggatctagatgtagtttcatcgttgacgcgtgcatggcctatgcagCAAAGTGATGGATGTTCTCATCAGAGCTGCCGAGTTCGTGGAAATCCCGGTGCGTAGAAGTGATGAAGAGCCGTTGCAGAAGCTTTTTGTTGTAGTACGA
species | Selaginella moellendorffii |
transcript | EFJ37559 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAACGTTGTCAAGCTATTACTATCTTATGAAACCATCACTGGCTCCCAG CAAAGTGATGGATGTTCTCATCAGAGCTGCCGAGTTCGTGGAAATCCCAGTEST: gi|169060098|gb|FE468084.1|FE468084
genomic: CAAACGTTGTCAAGCTATTACTATCTTATGAAACCATCACTGGCTCCCAGgtaacggatc ... gcctatgcagCAAAGTGATGGATGTTCTCATCAGAGCTGCCGAGTTCGTGGAAATCCCGGT
EST: CAAACGTTGTCAAGCTATTACTATCTTATGAAACCATCACTGGCTCCCAG CAAAGTGATGGATGTTCTCATCAGAGCTGCCGAGTTCGTGGAAATCCCGGTEST: gi|169020381|gb|FE431628.1|FE431628
genomic: CAAACGTTGTCAAGCTATTACTATCTTATGAAACCATCACTGGCTCCCAGgtaacggatc ... gcctatgcagCAAAGTGATGGATGTTCTCATCAGAGCTGCCGAGTTCGTGGAAATCCCGGT
EST: CAAACGTTGTCAAGCTATTACTATCTTATGAAACCATCACTGGCTCCCAG CAAAGTGATGGATGTTCTCATCAGAGCTGCCGAGTTCGTGGAAATCCCGGT
genomic: CAAACGTTGTCAAGCTATTACTATCTTATGAAACCATCACTGGCTCCCAGgtaacggatc ... gcctatgcagCAAAGTGATGGATGTTCTCATCAGAGCTGCCGAGTTCGTGGAAATCCCGGT
gtaacggatctagatgtagtttcatcgttgacgcgtgcatggcctatgcagCAAAGTGATGGATGTTCTCATCAGAGCTGCCGAGTTCGTGGAAATCCCGGTGCGTAGAAGTGATGAAGAGCCGTTGCAGAAGCTTTTTGTTGTAGTACGA
cgttgac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacggatctagatgtagtttcatcgttgacgcgtgcatggcctatgcagCAAAGTGATGGATGTTCTCATCAGAGCTGCCGAGTTCGTGGAAATCCCGGTGCGTAGAAGTGATGAAGAGCCGTTGCAGAAGCTTTTTGTTGTAGTACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC