Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcgtctttctccacatgtgttactaaagtcttgggtgacagGATCATGTTCGGAATCAGCTTATTCAGTTCGAGCTCATTCTGACCACGGCAACGTTTGTGATGGCGTTCTATAGCATCATTGCTGGCATTTTTGGTATGA

Basic information

species Selaginella moellendorffii
transcript EFJ37468
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ37468 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: AT1G16010.3 (Arabidopsis thaliana), 3'ss of exon 6
---------------------------------------gtaagctcgtctttctccacatgtgttactaaag---tcttgggtg---acagGATCATGTTCGGAATCAGCTTATTCAGTTCGAGCTCATTCTGACCACGGCAACGTTTGTGATGGCGTTCTATAGCATCATTGCTGGCATTTTTGGTATGA
                                          || | |    |   ||   ||  | || ||    ||||   |     |||||| |||| ||||||||||| || ||||||||| |  ||||||| || |||||||||||  | ||  | | | |  || ||||||| || ||||| ||||
gtaatacctcaaaattccatcttccacagctgatattaatccagattgagaatgcacaagagtcatgctgaaaacctcttcaatatctgcagGATAATGTGCGGAATCAGCTGATCCAGTTCGAGTTGCTTCTGACGACTGCAACGTTTGTTGTAGCCATATTTGGGGTCGTTGCTGGGATCTTTGGGATGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169075862|gb|FE480948.1|FE480948
EST:     CTGGAAGAATATATCGAGGACACGGAAGACTTGATCAATATTAATTTG                         GATCATGTTCGGAATCAGCTTATTCAGTTCGAGCTCATTCTGACCACGGCA
genomic: CTGGAAGAATATATCGAGGACACGGAAGACTTGATCAATATTAATTTGgtaagctcgt ... tgggtgacagGATCATGTTCGGAATCAGCTTATTCAGTTCGAGCTCATTCTGACCACGGCA
EST: gi|169027811|gb|FE433245.1|FE433245
EST:     CTGGAAGAATATATCGAGGACACGGAAGACTTGATCAATATTAATTTG                         GATCATGTTCGGAATCAGCTTATTCAGTTCGAGCTCATTCTGACCACGGCA
genomic: CTGGAAGAATATATCGAGGACACGGAAGACTTGATCAATATTAATTTGgtaagctcgt ... tgggtgacagGATCATGTTCGGAATCAGCTTATTCAGTTCGAGCTCATTCTGACCACGGCA
EST: gi|169075863|gb|FE480949.1|FE480949
EST:     CTGGAAGAATATATCGAGGACACGGAAGACTTGATCAATATTAATTTG                         GATCATGTTCGGAATCAGCTTATTCAGTTCGAGCTCATTCTGACCACGGCA
genomic: CTGGAAGAATATATCGAGGACACGGAAGACTTGATCAATATTAATTTGgtaagctcgt ... tgggtgacagGATCATGTTCGGAATCAGCTTATTCAGTTCGAGCTCATTCTGACCACGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaagctcgtctttctccacatgtgttactaaagtcttgggtgacagGATCATGTTCGGAATCAGCTTATTCAGTTCGAGCTCATTCTGACCACGGCAACGTTTGTGATGGCGTTCTATAGCATCATTGCTGGCATTTTTGGTATGA
                                  tactaaa  putative branch site (score: 1)
                                         ttactaaa  TA-rich tract