1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgtccttcgttttttctcccagtttttctcggtttgctaagaagtgtgtgtatgcacggtgcatggccagGTGTCATTGACTTTGCTGTGGAGAAAGGAACTCTCATCGGTGGCGATGATTTCAAGTCTGGACAAACAAAGATGAAATCCGTGCTCGTGGATTTCCTGGT
species | Selaginella moellendorffii |
transcript | EFJ37320 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGGGTGTTCCTTTCATNCA-CGGGAGCCCCCAGAACACTTTTGTCCCAN GTGTCATTGACTTTGCTGTGGAGAAAGGAACTCTCATCGGTGGCGEST: gi|169059832|gb|FE467844.1|FE467844
genomic: GAGGGTGTTCCTTTCAT-CAACGGGAGCCCCCAGAACACTTTTGTCCCAGgtgtccttcg ... gcatggccagGTGTCATTGACTTTGCTGTGGAGAAAGGAACTCTCATCGGTGGCG
EST: AGAGGGTGTTCCTTTCATCAACGGGAGCCCCCAGAACACTTTTGTCCCAN GTGTCATTGACTTTGCTGTGGAGAAAGGA-CTCTCATCGGTGGCGATGATT
genomic: AGAGGGTGTTCCTTTCATCAACGGGAGCCCCCAGAACACTTTTGTCCCAGgtgtccttcg ... gcatggccagGTGTCATTGACTTTGCTGTGGAGAAAGGAACTCTCATCGGTGGCGATGATT
ctcccagtttttctcggtttgctaagaagtgtgtgtatgcacggtgcatggccagGTGTCATTGACTTTGCTGTGGAGAAAGGAACTCTCATCGGTGGCGATGATTTCAAGTCTGGACAAACAAAGATGAAATCCGTGCTCGTGGATTTCCTGGT
agttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtccttcgttttttctcccagtttttctcggtttgctaagaagtgtgtgtatgcacggtgcatggccagGTGTCATTGACTTTGCTGTGGAGAAAGGAACTCTCATCGGTGGCGATGATTTCAAGTCTGGACAAACAAAGATGAAATCCGTGCTCGTGGATTTCCTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG