1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaaacggaatctgttctttttgtttcttccttattaatgttcgttacagTTACTGCTAGTTGACAAGAAGATCACAAATGCTCGAGATATAGTATCCATCCTTGAAGACGCCATTCGTGCTGGAAGTCCTCTTCTTATTATCGCGGAGG
species | Selaginella moellendorffii |
transcript | EFJ36935 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACTTTGTGACAGACACAGAGAAAATGGCCGTGGAATATCAGAATTGCAAG TTACTGCTAGTTGACAAGAAGATCACAAATGCTCGAGATATAGTATCCATCEST: gi|169021474|gb|FE428561.1|FE428561
genomic: ACTTTGTGACAGACACGGAGAAAATGGCCGTGGAATATCAGAATTGCAAGgtaaacggaa ... ttcgttacagTTACTGCTAGTTGACAAGAAGATCACAAATGCTCGAGATATAGTATCCATC
EST: ACTTTGTGACAGACACGGAGAAAATGGCCGTGGAATATCAGAATTGCAAG TTACTGCTAGTTGACAAGAAGATCACAAATGCTCGAGATATAGTATCCATCEST: gi|169098701|gb|FE500239.1|FE500239
genomic: ACTTTGTGACAGACACGGAGAAAATGGCCGTGGAATATCAGAATTGCAAGgtaaacggaa ... ttcgttacagTTACTGCTAGTTGACAAGAAGATCACAAATGCTCGAGATATAGTATCCATC
EST: ACTTTGTGACAGACACGGAGAAAATGGCCGTGGAATATCAGAATTGCAAG TTACTGCTAGTTGACAAGAAGATCACAAATGCTCGAGATATAGTATCCATCEST: gi|169024291|gb|FE432552.1|FE432552
genomic: ACTTTGTGACAGACACGGAGAAAATGGCCGTGGAATATCAGAATTGCAAGgtaaacggaa ... ttcgttacagTTACTGCTAGTTGACAAGAAGATCACAAATGCTCGAGATATAGTATCCATC
EST: ACTTTGTGACAGACACGGAGAAAATGGCCGTGGAATATCAGAATTGCAAG TTACTGCTAGTTGACAAGAAGATCACAAATGCTCGAGATATAGTATCCATC
genomic: ACTTTGTGACAGACACGGAGAAAATGGCCGTGGAATATCAGAATTGCAAGgtaaacggaa ... ttcgttacagTTACTGCTAGTTGACAAGAAGATCACAAATGCTCGAGATATAGTATCCATC
gtaaacggaatctgttctttttgtttcttccttattaatgttcgttacagTTACTGCTAGTTGACAAGAAGATCACAAATGCTCGAGATATAGTATCCATCCTTGAAGACGCCATTCGTGCTGGAAGTCCTCTTCTTATTATCGCGGAGG
tattaat putative branch site (score: 15)
ttattaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacggaatctgttctttttgtttcttccttattaatgttcgttacagTTACTGCTAGTTGACAAGAAGATCACAAATGCTCGAGATATAGTATCCATCCTTGAAGACGCCATTCGTGCTGGAAGTCCTCTTCTTATTATCGCGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG